Strain Fitness in Pseudomonas simiae WCS417 around PS417_10665
Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2 |
|---|---|---|---|---|---|
| remove | |||||
| 2,278,041 | + | PS417_10660 | 0.79 | -0.0 | |
| 2,278,124 | - | PS417_10660 | 0.81 | +0.1 | |
| 2,278,256 | + | PS417_10660 | 0.85 | -0.3 | |
| 2,278,256 | + | PS417_10660 | 0.85 | +0.0 | |
| 2,278,256 | + | PS417_10660 | 0.85 | +0.3 | |
| 2,278,257 | - | PS417_10660 | 0.85 | +0.2 | |
| 2,278,257 | - | PS417_10660 | 0.85 | +0.1 | |
| 2,278,257 | - | PS417_10660 | 0.85 | -0.4 | |
| 2,278,257 | - | PS417_10660 | 0.85 | +0.3 | |
| 2,278,257 | - | PS417_10660 | 0.85 | -0.2 | |
| 2,278,257 | - | PS417_10660 | 0.85 | -0.9 | |
| 2,278,257 | - | PS417_10660 | 0.85 | +1.9 | |
| 2,278,272 | - | PS417_10660 | 0.85 | +0.5 | |
| 2,278,484 | + | +0.4 | |||
| 2,278,846 | - | -0.2 | |||
| 2,278,860 | + | +1.3 | |||
| 2,278,884 | - | +0.6 | |||
| 2,278,884 | - | -1.8 | |||
| 2,279,174 | + | PS417_10665 | 0.55 | -0.6 | |
| 2,279,175 | - | PS417_10665 | 0.55 | -1.9 | |
| 2,279,633 | + | PS417_10670 | 0.33 | +1.1 | |
| 2,279,633 | + | PS417_10670 | 0.33 | +0.5 | |
| 2,279,633 | + | PS417_10670 | 0.33 | -0.1 | |
| 2,279,634 | - | PS417_10670 | 0.33 | +0.0 | |
| 2,279,634 | - | PS417_10670 | 0.33 | -0.2 | |
| 2,279,897 | + | PS417_10670 | 0.65 | +0.2 | |
| 2,280,050 | + | PS417_10670 | 0.84 | -0.5 | |
| 2,280,316 | - | -0.7 |
Or see this region's nucleotide sequence