Strain Fitness in Pseudomonas simiae WCS417 around PS417_00045
Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2 |
---|---|---|---|---|---|
remove | |||||
9,935 | - | PS417_00040 | 0.66 | -1.9 | |
9,935 | - | PS417_00040 | 0.66 | -0.4 | |
10,043 | + | PS417_00040 | 0.70 | +0.5 | |
10,175 | - | PS417_00040 | 0.76 | -0.0 | |
10,175 | - | PS417_00040 | 0.76 | -0.4 | |
10,275 | - | PS417_00040 | 0.81 | +0.7 | |
10,275 | - | PS417_00040 | 0.81 | -0.2 | |
10,275 | - | PS417_00040 | 0.81 | -0.1 | |
10,303 | + | PS417_00040 | 0.82 | -0.5 | |
10,323 | - | PS417_00040 | 0.83 | -0.0 | |
10,328 | + | PS417_00040 | 0.83 | +0.8 | |
10,328 | + | PS417_00040 | 0.83 | +0.2 | |
10,434 | + | PS417_00040 | 0.88 | -0.8 | |
10,435 | - | PS417_00040 | 0.88 | -0.6 | |
10,435 | - | PS417_00040 | 0.88 | +0.9 | |
10,472 | + | PS417_00040 | 0.89 | -0.2 | |
10,627 | + | +0.0 | |||
10,741 | - | -0.4 | |||
10,900 | - | +0.9 | |||
10,900 | - | +0.5 | |||
11,028 | + | PS417_00045 | 0.17 | -2.5 | |
11,679 | - | -2.5 | |||
11,679 | - | +0.2 | |||
11,753 | - | -1.2 | |||
11,763 | - | +0.8 |
Or see this region's nucleotide sequence