Strain Fitness in Pseudomonas simiae WCS417 around PS417_17925
Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2 |
---|---|---|---|---|---|
remove | |||||
3,910,312 | - | PS417_17915 | 0.70 | +0.2 | |
3,910,326 | + | PS417_17915 | 0.71 | +0.3 | |
3,910,419 | + | PS417_17915 | 0.78 | -0.2 | |
3,910,420 | - | +0.1 | |||
3,910,504 | - | PS417_17915 | 0.84 | +1.2 | |
3,910,615 | - | +0.4 | |||
3,910,767 | + | PS417_17920 | 0.16 | +0.9 | |
3,910,767 | + | PS417_17920 | 0.16 | +0.2 | |
3,910,767 | + | PS417_17920 | 0.16 | +0.1 | |
3,910,767 | + | PS417_17920 | 0.16 | +0.1 | |
3,910,768 | - | PS417_17920 | 0.16 | +0.2 | |
3,910,851 | + | PS417_17920 | 0.31 | -0.0 | |
3,910,851 | + | PS417_17920 | 0.31 | +0.2 | |
3,911,356 | + | -0.6 | |||
3,911,493 | - | PS417_17925 | 0.18 | -0.3 | |
3,911,755 | + | PS417_17925 | 0.41 | -0.7 | |
3,912,463 | + | +0.5 | |||
3,912,463 | + | +0.3 | |||
3,912,463 | + | -0.2 | |||
3,912,467 | - | -0.2 | |||
3,913,061 | + | PS417_17930 | 0.25 | +0.7 | |
3,913,061 | + | PS417_17930 | 0.25 | -0.5 | |
3,913,347 | + | PS417_17930 | 0.44 | +0.8 |
Or see this region's nucleotide sequence