Strain Fitness in Pseudomonas simiae WCS417 around PS417_17000
Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2 |
---|---|---|---|---|---|
remove | |||||
3,712,831 | + | +0.0 | |||
3,712,832 | - | -0.1 | |||
3,713,377 | - | PS417_16995 | 0.64 | -0.2 | |
3,713,377 | - | PS417_16995 | 0.64 | -0.6 | |
3,713,467 | + | PS417_16995 | 0.73 | +0.4 | |
3,713,468 | - | PS417_16995 | 0.74 | -0.0 | |
3,713,599 | + | PS417_16995 | 0.88 | +0.1 | |
3,713,600 | - | PS417_16995 | 0.88 | -0.3 | |
3,713,600 | - | PS417_16995 | 0.88 | -0.2 | |
3,713,713 | + | -0.1 | |||
3,713,805 | - | +1.1 | |||
3,713,808 | + | +1.1 | |||
3,713,808 | + | -0.1 | |||
3,713,809 | - | +1.0 | |||
3,713,865 | + | PS417_17000 | 0.18 | -0.9 | |
3,713,916 | + | PS417_17000 | 0.31 | -0.3 | |
3,715,107 | - | -0.3 | |||
3,715,163 | + | -0.2 | |||
3,715,163 | + | -0.2 | |||
3,715,163 | + | -0.7 | |||
3,715,163 | + | +0.6 | |||
3,715,163 | + | -0.1 | |||
3,715,164 | - | -1.0 | |||
3,715,173 | + | +0.5 |
Or see this region's nucleotide sequence