Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03390 and PS417_03395 are separated by 141 nucleotides PS417_03395 and PS417_03400 are separated by 44 nucleotides
PS417_03390: PS417_03390 - AraC family transcriptional regulator, at 778,338 to 779,159
_03390
PS417_03395: PS417_03395 - lysine transporter LysE, at 779,301 to 779,939
_03395
PS417_03400: PS417_03400 - D-alanine--D-alanine ligase, at 779,984 to 781,078
_03400
Position (kb) 779
780 Strain fitness (log2 ratio) -2
-1
0
1 at 778.393 kb on + strand at 778.394 kb on - strand at 778.519 kb on + strand, within PS417_03390 at 778.520 kb on - strand, within PS417_03390 at 778.666 kb on + strand, within PS417_03390 at 778.667 kb on - strand, within PS417_03390 at 778.667 kb on - strand, within PS417_03390 at 778.888 kb on + strand, within PS417_03390 at 778.889 kb on - strand, within PS417_03390 at 778.889 kb on - strand, within PS417_03390 at 779.041 kb on + strand, within PS417_03390 at 779.041 kb on + strand, within PS417_03390 at 779.041 kb on + strand, within PS417_03390 at 779.042 kb on - strand, within PS417_03390 at 779.042 kb on - strand, within PS417_03390 at 779.042 kb on - strand, within PS417_03390 at 779.189 kb on + strand at 779.189 kb on + strand at 779.190 kb on - strand at 779.190 kb on - strand at 779.231 kb on + strand at 779.259 kb on + strand at 779.259 kb on + strand at 779.514 kb on - strand, within PS417_03395 at 779.532 kb on + strand, within PS417_03395 at 779.532 kb on + strand, within PS417_03395 at 779.533 kb on - strand, within PS417_03395 at 779.533 kb on - strand, within PS417_03395 at 779.562 kb on + strand, within PS417_03395 at 779.562 kb on + strand, within PS417_03395 at 779.563 kb on - strand, within PS417_03395 at 779.571 kb on + strand, within PS417_03395 at 779.587 kb on + strand, within PS417_03395 at 779.587 kb on + strand, within PS417_03395 at 779.902 kb on - strand at 779.960 kb on + strand at 779.961 kb on - strand at 779.961 kb on - strand at 780.000 kb on + strand at 780.007 kb on + strand at 780.472 kb on + strand, within PS417_03400 at 780.488 kb on - strand, within PS417_03400 at 780.488 kb on - strand, within PS417_03400 at 780.488 kb on - strand, within PS417_03400 at 780.488 kb on - strand, within PS417_03400 at 780.594 kb on - strand, within PS417_03400 at 780.743 kb on + strand, within PS417_03400 at 780.762 kb on - strand, within PS417_03400
Per-strain Table
Position Strand Gene LocusTag Fraction TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 2 remove 778,393 + +0.2 778,394 - -0.4 778,519 + PS417_03390 0.22 -0.8 778,520 - PS417_03390 0.22 +1.1 778,666 + PS417_03390 0.40 +0.1 778,667 - PS417_03390 0.40 +0.1 778,667 - PS417_03390 0.40 -0.2 778,888 + PS417_03390 0.67 +1.5 778,889 - PS417_03390 0.67 +0.0 778,889 - PS417_03390 0.67 +0.1 779,041 + PS417_03390 0.86 +0.5 779,041 + PS417_03390 0.86 -1.5 779,041 + PS417_03390 0.86 -0.0 779,042 - PS417_03390 0.86 -0.0 779,042 - PS417_03390 0.86 -2.0 779,042 - PS417_03390 0.86 +0.3 779,189 + -0.5 779,189 + +1.0 779,190 - +0.1 779,190 - -0.2 779,231 + +0.0 779,259 + -0.7 779,259 + -0.6 779,514 - PS417_03395 0.33 +0.1 779,532 + PS417_03395 0.36 +0.1 779,532 + PS417_03395 0.36 -0.4 779,533 - PS417_03395 0.36 -0.2 779,533 - PS417_03395 0.36 +0.2 779,562 + PS417_03395 0.41 +0.1 779,562 + PS417_03395 0.41 -0.1 779,563 - PS417_03395 0.41 -0.4 779,571 + PS417_03395 0.42 -0.2 779,587 + PS417_03395 0.45 -1.0 779,587 + PS417_03395 0.45 +1.1 779,902 - -0.1 779,960 + -0.2 779,961 - +0.0 779,961 - +0.3 780,000 + -1.2 780,007 + -0.0 780,472 + PS417_03400 0.45 +0.2 780,488 - PS417_03400 0.46 +0.6 780,488 - PS417_03400 0.46 -0.1 780,488 - PS417_03400 0.46 +0.6 780,488 - PS417_03400 0.46 +0.3 780,594 - PS417_03400 0.56 +0.2 780,743 + PS417_03400 0.69 +0.7 780,762 - PS417_03400 0.71 -0.5
Or see this region's nucleotide sequence