Experiment: TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03900 and PS417_03905 are separated by 199 nucleotides PS417_03905 and PS417_03910 are separated by 35 nucleotides
PS417_03900: PS417_03900 - type II secretion system protein F, at 872,310 to 873,518
_03900
PS417_03905: PS417_03905 - fimbrial protein, at 873,718 to 874,134
_03905
PS417_03910: PS417_03910 - pilus assembly protein, at 874,170 to 875,570
_03910
Position (kb) 873
874
875 Strain fitness (log2 ratio) -2
-1
0
1 at 873.010 kb on + strand, within PS417_03900 at 873.011 kb on - strand, within PS417_03900 at 873.039 kb on + strand, within PS417_03900 at 873.131 kb on - strand, within PS417_03900 at 873.131 kb on - strand, within PS417_03900 at 873.281 kb on + strand, within PS417_03900 at 873.553 kb on + strand at 873.554 kb on - strand at 873.554 kb on - strand at 873.554 kb on - strand at 873.554 kb on - strand at 873.554 kb on - strand at 873.558 kb on + strand at 873.559 kb on - strand at 873.648 kb on - strand at 873.663 kb on + strand at 873.701 kb on + strand at 873.806 kb on - strand, within PS417_03905 at 873.806 kb on - strand, within PS417_03905 at 873.806 kb on - strand, within PS417_03905 at 873.806 kb on - strand, within PS417_03905 at 873.806 kb on - strand, within PS417_03905 at 874.099 kb on + strand at 874.099 kb on + strand at 874.139 kb on + strand at 874.569 kb on + strand, within PS417_03910 at 874.569 kb on + strand, within PS417_03910 at 874.570 kb on - strand, within PS417_03910 at 874.576 kb on - strand, within PS417_03910 at 874.576 kb on - strand, within PS417_03910 at 874.749 kb on - strand, within PS417_03910 at 874.922 kb on + strand, within PS417_03910 at 874.922 kb on + strand, within PS417_03910 at 874.922 kb on + strand, within PS417_03910 at 874.923 kb on - strand, within PS417_03910 at 875.027 kb on + strand, within PS417_03910 at 875.027 kb on + strand, within PS417_03910 at 875.027 kb on + strand, within PS417_03910 at 875.027 kb on + strand, within PS417_03910 at 875.028 kb on - strand, within PS417_03910 at 875.028 kb on - strand at 875.090 kb on + strand, within PS417_03910 at 875.090 kb on + strand, within PS417_03910 at 875.091 kb on - strand, within PS417_03910
Per-strain Table
Position Strand Gene LocusTag Fraction TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 2 remove 873,010 + PS417_03900 0.58 +0.0 873,011 - PS417_03900 0.58 -0.2 873,039 + PS417_03900 0.60 +0.3 873,131 - PS417_03900 0.68 +0.3 873,131 - PS417_03900 0.68 -0.4 873,281 + PS417_03900 0.80 +0.1 873,553 + +0.7 873,554 - -0.1 873,554 - -0.4 873,554 - +0.4 873,554 - -0.5 873,554 - +0.1 873,558 + +0.4 873,559 - +0.1 873,648 - -0.6 873,663 + -0.2 873,701 + +0.6 873,806 - PS417_03905 0.21 -0.2 873,806 - PS417_03905 0.21 +0.0 873,806 - PS417_03905 0.21 +1.1 873,806 - PS417_03905 0.21 -0.5 873,806 - PS417_03905 0.21 +0.0 874,099 + -1.1 874,099 + +0.0 874,139 + -0.1 874,569 + PS417_03910 0.28 -0.3 874,569 + PS417_03910 0.28 -0.2 874,570 - PS417_03910 0.29 -0.1 874,576 - PS417_03910 0.29 +1.2 874,576 - PS417_03910 0.29 -0.1 874,749 - PS417_03910 0.41 +0.8 874,922 + PS417_03910 0.54 +0.5 874,922 + PS417_03910 0.54 +0.2 874,922 + PS417_03910 0.54 -0.1 874,923 - PS417_03910 0.54 +0.8 875,027 + PS417_03910 0.61 +0.5 875,027 + PS417_03910 0.61 +0.2 875,027 + PS417_03910 0.61 -1.9 875,027 + PS417_03910 0.61 +0.5 875,028 - PS417_03910 0.61 -0.1 875,028 - +0.9 875,090 + PS417_03910 0.66 +0.6 875,090 + PS417_03910 0.66 -0.3 875,091 - PS417_03910 0.66 +0.2
Or see this region's nucleotide sequence