Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02870 and PS417_02875 are separated by 93 nucleotides PS417_02875 and PS417_02880 are separated by 11 nucleotides PS417_02880 and PS417_02885 are separated by 47 nucleotides
PS417_02870: PS417_02870 - TonB-dependent receptor, at 656,099 to 658,168
_02870
PS417_02875: PS417_02875 - hypothetical protein, at 658,262 to 658,651
_02875
PS417_02880: PS417_02880 - copper chaperone, at 658,663 to 659,145
_02880
PS417_02885: PS417_02885 - hypothetical protein, at 659,193 to 659,588
_02885
Position (kb) 658
659 Strain fitness (log2 ratio) -2
-1
0
1
2 at 657.294 kb on + strand, within PS417_02870 at 657.301 kb on - strand, within PS417_02870 at 657.304 kb on - strand, within PS417_02870 at 657.304 kb on - strand, within PS417_02870 at 657.530 kb on - strand, within PS417_02870 at 657.543 kb on + strand, within PS417_02870 at 657.544 kb on - strand, within PS417_02870 at 657.544 kb on - strand, within PS417_02870 at 657.582 kb on + strand, within PS417_02870 at 657.777 kb on + strand, within PS417_02870 at 657.778 kb on - strand, within PS417_02870 at 657.778 kb on - strand, within PS417_02870 at 657.795 kb on + strand, within PS417_02870 at 658.133 kb on - strand at 658.133 kb on - strand at 658.135 kb on - strand at 658.191 kb on + strand at 658.246 kb on + strand at 658.247 kb on - strand at 658.517 kb on - strand, within PS417_02875 at 658.664 kb on + strand at 658.877 kb on - strand, within PS417_02880 at 659.076 kb on - strand, within PS417_02880 at 659.285 kb on + strand, within PS417_02885 at 659.303 kb on - strand, within PS417_02885 at 659.303 kb on - strand, within PS417_02885 at 659.303 kb on - strand, within PS417_02885 at 659.470 kb on - strand, within PS417_02885 at 659.629 kb on - strand at 659.651 kb on - strand at 659.651 kb on - strand at 659.651 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 1 remove 657,294 + PS417_02870 0.58 -1.9 657,301 - PS417_02870 0.58 +0.2 657,304 - PS417_02870 0.58 +1.3 657,304 - PS417_02870 0.58 -1.3 657,530 - PS417_02870 0.69 -0.0 657,543 + PS417_02870 0.70 -0.0 657,544 - PS417_02870 0.70 -1.2 657,544 - PS417_02870 0.70 -0.9 657,582 + PS417_02870 0.72 -1.3 657,777 + PS417_02870 0.81 -0.7 657,778 - PS417_02870 0.81 +0.7 657,778 - PS417_02870 0.81 +1.1 657,795 + PS417_02870 0.82 +1.7 658,133 - +0.7 658,133 - +1.0 658,135 - -0.3 658,191 + -0.8 658,246 + +1.7 658,247 - -0.0 658,517 - PS417_02875 0.65 +0.2 658,664 + +0.7 658,877 - PS417_02880 0.44 +1.7 659,076 - PS417_02880 0.86 +2.2 659,285 + PS417_02885 0.23 +0.1 659,303 - PS417_02885 0.28 +2.7 659,303 - PS417_02885 0.28 +1.0 659,303 - PS417_02885 0.28 +0.6 659,470 - PS417_02885 0.70 +1.0 659,629 - +0.3 659,651 - -0.8 659,651 - -2.7 659,651 - -0.4
Or see this region's nucleotide sequence