Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19775 and PS417_19780 overlap by 4 nucleotides PS417_19780 and PS417_19785 are separated by 65 nucleotides PS417_19785 and PS417_19790 are separated by 3 nucleotides PS417_19790 and PS417_19795 overlap by 11 nucleotides PS417_19795 and PS417_19800 are separated by 10 nucleotides
PS417_19775: PS417_19775 - chemotaxis protein CheY, at 4,293,786 to 4,295,504
_19775
PS417_19780: PS417_19780 - anti-anti-sigma factor, at 4,295,501 to 4,295,806
_19780
PS417_19785: PS417_19785 - flagellar biogenesis protein, at 4,295,872 to 4,296,321
_19785
PS417_19790: PS417_19790 - ATP synthase, at 4,296,325 to 4,297,683
_19790
PS417_19795: PS417_19795 - flagellar assembly protein FliH, at 4,297,673 to 4,298,437
_19795
PS417_19800: PS417_19800 - flagellar motor switch protein FliG, at 4,298,448 to 4,299,467
_19800
Position (kb) 4296
4297
4298 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4295.395 kb on - strand at 4295.566 kb on + strand, within PS417_19780 at 4295.649 kb on + strand, within PS417_19780 at 4295.649 kb on + strand, within PS417_19780 at 4295.649 kb on + strand, within PS417_19780 at 4295.650 kb on - strand, within PS417_19780 at 4295.650 kb on - strand, within PS417_19780 at 4295.650 kb on - strand, within PS417_19780 at 4295.650 kb on - strand, within PS417_19780 at 4295.650 kb on - strand, within PS417_19780 at 4295.650 kb on - strand, within PS417_19780 at 4295.677 kb on - strand, within PS417_19780 at 4295.694 kb on + strand, within PS417_19780 at 4295.707 kb on - strand, within PS417_19780 at 4295.845 kb on - strand at 4295.871 kb on - strand at 4295.871 kb on - strand at 4295.876 kb on + strand at 4295.876 kb on + strand at 4295.877 kb on - strand at 4295.964 kb on - strand, within PS417_19785 at 4295.964 kb on - strand, within PS417_19785 at 4296.170 kb on + strand, within PS417_19785 at 4296.237 kb on - strand, within PS417_19785 at 4296.414 kb on - strand at 4296.414 kb on - strand at 4296.552 kb on + strand, within PS417_19790 at 4296.553 kb on - strand, within PS417_19790 at 4296.605 kb on + strand, within PS417_19790 at 4296.729 kb on - strand, within PS417_19790 at 4296.729 kb on - strand at 4297.144 kb on - strand, within PS417_19790 at 4297.144 kb on - strand, within PS417_19790 at 4297.926 kb on + strand, within PS417_19795 at 4297.926 kb on + strand, within PS417_19795 at 4297.927 kb on - strand, within PS417_19795 at 4297.927 kb on - strand, within PS417_19795 at 4297.934 kb on + strand, within PS417_19795 at 4297.934 kb on + strand, within PS417_19795 at 4297.935 kb on - strand, within PS417_19795 at 4297.935 kb on - strand, within PS417_19795 at 4297.935 kb on - strand, within PS417_19795 at 4298.227 kb on - strand, within PS417_19795 at 4298.243 kb on - strand, within PS417_19795 at 4298.449 kb on + strand at 4298.449 kb on + strand at 4298.449 kb on + strand at 4298.449 kb on + strand at 4298.449 kb on + strand at 4298.450 kb on - strand at 4298.450 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 1 remove 4,295,395 - -0.4 4,295,566 + PS417_19780 0.21 +0.4 4,295,649 + PS417_19780 0.48 -2.9 4,295,649 + PS417_19780 0.48 -0.3 4,295,649 + PS417_19780 0.48 -0.5 4,295,650 - PS417_19780 0.49 +1.3 4,295,650 - PS417_19780 0.49 +0.1 4,295,650 - PS417_19780 0.49 +0.1 4,295,650 - PS417_19780 0.49 -0.0 4,295,650 - PS417_19780 0.49 +0.1 4,295,650 - PS417_19780 0.49 -0.7 4,295,677 - PS417_19780 0.58 -0.4 4,295,694 + PS417_19780 0.63 -0.2 4,295,707 - PS417_19780 0.67 -0.0 4,295,845 - -0.3 4,295,871 - +0.0 4,295,871 - +0.6 4,295,876 + -0.4 4,295,876 + -0.1 4,295,877 - -0.5 4,295,964 - PS417_19785 0.20 +0.9 4,295,964 - PS417_19785 0.20 +0.5 4,296,170 + PS417_19785 0.66 +0.9 4,296,237 - PS417_19785 0.81 +2.4 4,296,414 - +0.6 4,296,414 - +0.8 4,296,552 + PS417_19790 0.17 +0.6 4,296,553 - PS417_19790 0.17 -0.2 4,296,605 + PS417_19790 0.21 +0.6 4,296,729 - PS417_19790 0.30 +1.1 4,296,729 - +2.0 4,297,144 - PS417_19790 0.60 +2.6 4,297,144 - PS417_19790 0.60 +0.6 4,297,926 + PS417_19795 0.33 +0.7 4,297,926 + PS417_19795 0.33 +0.7 4,297,927 - PS417_19795 0.33 +1.0 4,297,927 - PS417_19795 0.33 +0.7 4,297,934 + PS417_19795 0.34 +0.3 4,297,934 + PS417_19795 0.34 +1.0 4,297,935 - PS417_19795 0.34 +1.0 4,297,935 - PS417_19795 0.34 +0.6 4,297,935 - PS417_19795 0.34 +0.8 4,298,227 - PS417_19795 0.72 +0.4 4,298,243 - PS417_19795 0.75 +0.9 4,298,449 + +1.6 4,298,449 + +0.7 4,298,449 + +0.7 4,298,449 + +0.0 4,298,449 + +0.6 4,298,450 - -0.2 4,298,450 - -0.0
Or see this region's nucleotide sequence