Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19200 and PS417_19205 overlap by 4 nucleotides PS417_19205 and PS417_19210 are separated by 130 nucleotides
PS417_19200: PS417_19200 - fumarate hydratase, at 4,160,187 to 4,161,569
_19200
PS417_19205: PS417_19205 - membrane protein, at 4,161,566 to 4,162,522
_19205
PS417_19210: PS417_19210 - acetyl-CoA acetyltransferase, at 4,162,653 to 4,163,837
_19210
Position (kb) 4161
4162
4163 Strain fitness (log2 ratio) -2
-1
0
1 at 4160.744 kb on + strand, within PS417_19200 at 4161.262 kb on - strand, within PS417_19200 at 4161.465 kb on + strand at 4161.510 kb on + strand at 4161.554 kb on + strand at 4161.554 kb on + strand at 4161.554 kb on + strand at 4161.699 kb on + strand, within PS417_19205 at 4161.700 kb on - strand, within PS417_19205 at 4161.832 kb on + strand, within PS417_19205 at 4161.933 kb on + strand, within PS417_19205 at 4161.934 kb on - strand, within PS417_19205 at 4161.934 kb on - strand, within PS417_19205 at 4161.996 kb on + strand, within PS417_19205 at 4161.997 kb on - strand, within PS417_19205 at 4162.010 kb on - strand, within PS417_19205 at 4162.047 kb on + strand, within PS417_19205 at 4162.130 kb on + strand, within PS417_19205 at 4162.130 kb on + strand, within PS417_19205 at 4162.251 kb on + strand, within PS417_19205 at 4162.251 kb on + strand, within PS417_19205 at 4162.251 kb on + strand, within PS417_19205 at 4162.252 kb on - strand, within PS417_19205 at 4162.260 kb on + strand, within PS417_19205 at 4162.260 kb on + strand, within PS417_19205 at 4162.560 kb on + strand at 4162.601 kb on + strand at 4162.730 kb on + strand at 4162.730 kb on + strand at 4162.825 kb on + strand, within PS417_19210 at 4163.248 kb on + strand, within PS417_19210 at 4163.248 kb on + strand, within PS417_19210 at 4163.248 kb on + strand, within PS417_19210 at 4163.249 kb on - strand, within PS417_19210 at 4163.332 kb on + strand, within PS417_19210 at 4163.332 kb on + strand, within PS417_19210 at 4163.332 kb on + strand, within PS417_19210 at 4163.332 kb on + strand, within PS417_19210 at 4163.333 kb on - strand, within PS417_19210 at 4163.333 kb on - strand, within PS417_19210 at 4163.333 kb on - strand, within PS417_19210 at 4163.333 kb on - strand, within PS417_19210 at 4163.333 kb on - strand, within PS417_19210 at 4163.405 kb on - strand, within PS417_19210
Per-strain Table
Position Strand Gene LocusTag Fraction TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1 remove 4,160,744 + PS417_19200 0.40 -0.4 4,161,262 - PS417_19200 0.78 +0.1 4,161,465 + -0.2 4,161,510 + -0.8 4,161,554 + +0.5 4,161,554 + -0.3 4,161,554 + +0.3 4,161,699 + PS417_19205 0.14 +0.2 4,161,700 - PS417_19205 0.14 -1.3 4,161,832 + PS417_19205 0.28 -0.7 4,161,933 + PS417_19205 0.38 -0.5 4,161,934 - PS417_19205 0.38 -0.4 4,161,934 - PS417_19205 0.38 -1.1 4,161,996 + PS417_19205 0.45 +0.1 4,161,997 - PS417_19205 0.45 -0.2 4,162,010 - PS417_19205 0.46 -1.3 4,162,047 + PS417_19205 0.50 -1.9 4,162,130 + PS417_19205 0.59 -0.1 4,162,130 + PS417_19205 0.59 -1.1 4,162,251 + PS417_19205 0.72 +0.0 4,162,251 + PS417_19205 0.72 +1.3 4,162,251 + PS417_19205 0.72 -0.5 4,162,252 - PS417_19205 0.72 +0.6 4,162,260 + PS417_19205 0.73 -0.1 4,162,260 + PS417_19205 0.73 -0.5 4,162,560 + +0.6 4,162,601 + -0.2 4,162,730 + -0.2 4,162,730 + -0.3 4,162,825 + PS417_19210 0.15 -0.8 4,163,248 + PS417_19210 0.50 +0.9 4,163,248 + PS417_19210 0.50 +0.6 4,163,248 + PS417_19210 0.50 -0.4 4,163,249 - PS417_19210 0.50 +0.6 4,163,332 + PS417_19210 0.57 +0.6 4,163,332 + PS417_19210 0.57 -0.4 4,163,332 + PS417_19210 0.57 -0.3 4,163,332 + PS417_19210 0.57 -0.0 4,163,333 - PS417_19210 0.57 -0.5 4,163,333 - PS417_19210 0.57 -0.0 4,163,333 - PS417_19210 0.57 +0.1 4,163,333 - PS417_19210 0.57 +0.0 4,163,333 - PS417_19210 0.57 +1.5 4,163,405 - PS417_19210 0.63 +0.6
Or see this region's nucleotide sequence