Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 500 uM; timepoint 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00480 and PS417_00485 overlap by 4 nucleotides PS417_00485 and PS417_00490 are separated by 1 nucleotides PS417_00490 and PS417_00495 overlap by 4 nucleotides
PS417_00480: PS417_00480 - hypothetical protein, at 95,439 to 96,050
_00480
PS417_00485: PS417_00485 - ABC transporter permease, at 96,047 to 96,985
_00485
PS417_00490: PS417_00490 - iron ABC transporter ATP-binding protein, at 96,987 to 97,790
_00490
PS417_00495: PS417_00495 - ABC transporter permease, at 97,787 to 98,935
_00495
Position (kb) 96
97
98 Strain fitness (log2 ratio) -2
-1
0
1 at 96.018 kb on + strand at 96.019 kb on - strand at 96.030 kb on + strand at 96.763 kb on + strand, within PS417_00485 at 96.867 kb on + strand, within PS417_00485 at 96.990 kb on + strand at 96.991 kb on - strand at 96.991 kb on - strand at 96.991 kb on - strand at 96.999 kb on + strand at 97.150 kb on + strand, within PS417_00490 at 97.151 kb on - strand, within PS417_00490 at 97.354 kb on + strand, within PS417_00490 at 97.355 kb on - strand, within PS417_00490 at 97.623 kb on - strand, within PS417_00490 at 97.684 kb on + strand, within PS417_00490 at 97.685 kb on - strand, within PS417_00490 at 97.685 kb on - strand, within PS417_00490 at 97.685 kb on - strand, within PS417_00490 at 97.685 kb on - strand, within PS417_00490 at 97.779 kb on + strand at 97.780 kb on - strand at 98.045 kb on + strand, within PS417_00495 at 98.142 kb on - strand, within PS417_00495 at 98.397 kb on - strand, within PS417_00495 at 98.766 kb on - strand, within PS417_00495
Per-strain Table
Position Strand Gene LocusTag Fraction TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 500 uM; timepoint 1 remove 96,018 + -1.9 96,019 - -0.1 96,030 + -0.2 96,763 + PS417_00485 0.76 -0.3 96,867 + PS417_00485 0.87 -0.5 96,990 + -0.8 96,991 - -0.3 96,991 - -0.2 96,991 - -0.4 96,999 + -0.7 97,150 + PS417_00490 0.20 +0.2 97,151 - PS417_00490 0.20 -0.7 97,354 + PS417_00490 0.46 +0.2 97,355 - PS417_00490 0.46 +0.0 97,623 - PS417_00490 0.79 +0.2 97,684 + PS417_00490 0.87 -0.0 97,685 - PS417_00490 0.87 -0.1 97,685 - PS417_00490 0.87 -0.3 97,685 - PS417_00490 0.87 +0.7 97,685 - PS417_00490 0.87 +0.3 97,779 + +0.0 97,780 - -0.1 98,045 + PS417_00495 0.22 -0.4 98,142 - PS417_00495 0.31 -0.5 98,397 - PS417_00495 0.53 -0.8 98,766 - PS417_00495 0.85 +0.1
Or see this region's nucleotide sequence