Strain Fitness in Pseudomonas simiae WCS417 around PS417_04410

Experiment: TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04405 and PS417_04410 are separated by 25 nucleotidesPS417_04410 and PS417_04415 are separated by 8 nucleotidesPS417_04415 and PS417_04420 are separated by 128 nucleotides PS417_04405: PS417_04405 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 979,775 to 981,040 _04405 PS417_04410: PS417_04410 - hypothetical protein, at 981,066 to 981,245 _04410 PS417_04415: PS417_04415 - ATP phosphoribosyltransferase (EC 2.4.2.17) (from data), at 981,254 to 981,889 _04415 PS417_04420: PS417_04420 - histidinol dehydrogenase, at 982,018 to 983,340 _04420 Position (kb) 981 982Strain fitness (log2 ratio) -1 0 1at 981.056 kb on - strandat 981.056 kb on - strandat 981.149 kb on + strand, within PS417_04410at 981.150 kb on - strand, within PS417_04410at 981.182 kb on - strand, within PS417_04410at 981.227 kb on + strand, within PS417_04410at 981.425 kb on + strand, within PS417_04415at 981.425 kb on + strand, within PS417_04415at 981.464 kb on - strand, within PS417_04415at 981.483 kb on - strand, within PS417_04415at 981.500 kb on + strand, within PS417_04415at 981.501 kb on - strand, within PS417_04415at 981.501 kb on - strand, within PS417_04415at 981.501 kb on - strand, within PS417_04415at 981.623 kb on + strand, within PS417_04415at 981.624 kb on - strand, within PS417_04415at 981.650 kb on - strand, within PS417_04415at 981.972 kb on - strandat 982.002 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1
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981,056 - -0.7
981,056 - -0.1
981,149 + PS417_04410 0.46 +0.0
981,150 - PS417_04410 0.47 -1.3
981,182 - PS417_04410 0.64 -0.7
981,227 + PS417_04410 0.89 -0.7
981,425 + PS417_04415 0.27 +0.1
981,425 + PS417_04415 0.27 +0.5
981,464 - PS417_04415 0.33 -0.1
981,483 - PS417_04415 0.36 -0.4
981,500 + PS417_04415 0.39 -0.5
981,501 - PS417_04415 0.39 -0.1
981,501 - PS417_04415 0.39 -0.3
981,501 - PS417_04415 0.39 -0.7
981,623 + PS417_04415 0.58 -0.3
981,624 - PS417_04415 0.58 -0.2
981,650 - PS417_04415 0.62 +0.2
981,972 - -0.2
982,002 + +0.5

Or see this region's nucleotide sequence