Strain Fitness in Pseudomonas simiae WCS417 around PS417_02145

Experiment: TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02140 and PS417_02145 are separated by 48 nucleotidesPS417_02145 and PS417_02150 are separated by 50 nucleotides PS417_02140: PS417_02140 - hypothetical protein, at 475,709 to 477,172 _02140 PS417_02145: PS417_02145 - potassium transporter KefA, at 477,221 to 480,559 _02145 PS417_02150: PS417_02150 - potassium/proton antiporter, at 480,610 to 482,352 _02150 Position (kb) 477 478 479 480 481Strain fitness (log2 ratio) -2 -1 0 1at 476.449 kb on - strand, within PS417_02140at 476.556 kb on - strand, within PS417_02140at 476.598 kb on + strand, within PS417_02140at 476.598 kb on + strand, within PS417_02140at 476.601 kb on + strand, within PS417_02140at 476.602 kb on - strand, within PS417_02140at 476.602 kb on - strand, within PS417_02140at 476.607 kb on + strand, within PS417_02140at 476.607 kb on + strand, within PS417_02140at 476.843 kb on + strand, within PS417_02140at 476.944 kb on - strand, within PS417_02140at 477.214 kb on - strandat 477.304 kb on - strandat 477.331 kb on - strandat 477.389 kb on - strandat 477.489 kb on + strandat 477.489 kb on + strandat 477.490 kb on - strandat 477.490 kb on - strandat 477.490 kb on - strandat 477.490 kb on - strandat 477.939 kb on + strand, within PS417_02145at 477.939 kb on + strand, within PS417_02145at 477.939 kb on + strand, within PS417_02145at 477.940 kb on - strand, within PS417_02145at 477.940 kb on - strand, within PS417_02145at 477.940 kb on - strand, within PS417_02145at 477.964 kb on - strand, within PS417_02145at 478.106 kb on - strand, within PS417_02145at 478.128 kb on + strand, within PS417_02145at 478.128 kb on + strand, within PS417_02145at 478.128 kb on + strand, within PS417_02145at 478.129 kb on - strand, within PS417_02145at 478.191 kb on + strand, within PS417_02145at 478.191 kb on + strand, within PS417_02145at 478.419 kb on + strand, within PS417_02145at 478.809 kb on + strand, within PS417_02145at 479.025 kb on + strand, within PS417_02145at 479.110 kb on - strand, within PS417_02145at 479.110 kb on - strand, within PS417_02145at 479.436 kb on + strand, within PS417_02145at 479.436 kb on + strand, within PS417_02145at 479.437 kb on - strand, within PS417_02145at 479.488 kb on - strand, within PS417_02145at 479.561 kb on - strand, within PS417_02145at 479.562 kb on + strand, within PS417_02145at 479.562 kb on + strand, within PS417_02145at 479.712 kb on + strand, within PS417_02145at 479.713 kb on - strand, within PS417_02145at 479.891 kb on + strand, within PS417_02145at 479.891 kb on + strand, within PS417_02145at 479.891 kb on + strand, within PS417_02145at 479.892 kb on - strand, within PS417_02145at 480.373 kb on - strandat 480.373 kb on - strandat 480.373 kb on - strandat 480.554 kb on - strandat 480.559 kb on + strandat 480.559 kb on + strandat 480.611 kb on + strandat 480.982 kb on - strand, within PS417_02150at 481.265 kb on + strand, within PS417_02150at 481.266 kb on - strand, within PS417_02150at 481.350 kb on + strand, within PS417_02150at 481.471 kb on + strand, within PS417_02150at 481.472 kb on - strand, within PS417_02150at 481.513 kb on - strand, within PS417_02150at 481.513 kb on - strand, within PS417_02150at 481.548 kb on + strand, within PS417_02150at 481.549 kb on - strand, within PS417_02150

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1
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476,449 - PS417_02140 0.51 +1.1
476,556 - PS417_02140 0.58 -1.1
476,598 + PS417_02140 0.61 -0.3
476,598 + PS417_02140 0.61 -0.1
476,601 + PS417_02140 0.61 -1.4
476,602 - PS417_02140 0.61 +0.4
476,602 - PS417_02140 0.61 +0.0
476,607 + PS417_02140 0.61 -0.2
476,607 + PS417_02140 0.61 +0.3
476,843 + PS417_02140 0.77 -0.3
476,944 - PS417_02140 0.84 +0.4
477,214 - +0.2
477,304 - +0.4
477,331 - -0.0
477,389 - +0.4
477,489 + +0.2
477,489 + -1.1
477,490 - -0.2
477,490 - -1.0
477,490 - +0.2
477,490 - +0.0
477,939 + PS417_02145 0.22 -0.1
477,939 + PS417_02145 0.22 -0.2
477,939 + PS417_02145 0.22 -0.1
477,940 - PS417_02145 0.22 -0.0
477,940 - PS417_02145 0.22 +0.1
477,940 - PS417_02145 0.22 -0.5
477,964 - PS417_02145 0.22 +0.2
478,106 - PS417_02145 0.27 +0.1
478,128 + PS417_02145 0.27 -0.4
478,128 + PS417_02145 0.27 +0.1
478,128 + PS417_02145 0.27 +0.4
478,129 - PS417_02145 0.27 -0.7
478,191 + PS417_02145 0.29 -0.1
478,191 + PS417_02145 0.29 -0.6
478,419 + PS417_02145 0.36 -1.0
478,809 + PS417_02145 0.48 -0.9
479,025 + PS417_02145 0.54 +0.8
479,110 - PS417_02145 0.57 +0.1
479,110 - PS417_02145 0.57 +0.2
479,436 + PS417_02145 0.66 +0.1
479,436 + PS417_02145 0.66 -0.4
479,437 - PS417_02145 0.66 +0.6
479,488 - PS417_02145 0.68 +0.1
479,561 - PS417_02145 0.70 +0.2
479,562 + PS417_02145 0.70 -1.6
479,562 + PS417_02145 0.70 +0.0
479,712 + PS417_02145 0.75 +0.4
479,713 - PS417_02145 0.75 +0.2
479,891 + PS417_02145 0.80 -0.1
479,891 + PS417_02145 0.80 -0.6
479,891 + PS417_02145 0.80 -0.1
479,892 - PS417_02145 0.80 -0.0
480,373 - +0.1
480,373 - +0.0
480,373 - +0.3
480,554 - +0.7
480,559 + +0.1
480,559 + -0.5
480,611 + -0.0
480,982 - PS417_02150 0.21 -0.0
481,265 + PS417_02150 0.38 +0.1
481,266 - PS417_02150 0.38 -0.1
481,350 + PS417_02150 0.42 +0.0
481,471 + PS417_02150 0.49 +0.7
481,472 - PS417_02150 0.49 +0.2
481,513 - PS417_02150 0.52 +0.1
481,513 - PS417_02150 0.52 -2.0
481,548 + PS417_02150 0.54 +0.1
481,549 - PS417_02150 0.54 -0.1

Or see this region's nucleotide sequence