Experiment: TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_14650 and PS417_14655 are separated by 127 nucleotides PS417_14655 and PS417_14660 are separated by 60 nucleotides PS417_14660 and PS417_14665 are separated by 111 nucleotides
PS417_14650: PS417_14650 - chemotaxis protein, at 3,200,581 to 3,202,146
_14650
PS417_14655: PS417_14655 - lysine transporter LysE, at 3,202,274 to 3,202,894
_14655
PS417_14660: PS417_14660 - methyltransferase, at 3,202,955 to 3,203,611
_14660
PS417_14665: PS417_14665 - TetR family transcriptional regulator, at 3,203,723 to 3,204,355
_14665
Position (kb)
3202
3203 Strain fitness (log2 ratio)
-1
0
1
2 at 3202.058 kb on + strand at 3202.059 kb on - strand at 3202.235 kb on - strand at 3202.505 kb on + strand, within PS417_14655 at 3203.040 kb on + strand, within PS417_14660 at 3203.041 kb on - strand, within PS417_14660 at 3203.053 kb on - strand at 3203.124 kb on + strand, within PS417_14660 at 3203.159 kb on + strand at 3203.406 kb on + strand, within PS417_14660 at 3203.406 kb on + strand, within PS417_14660 at 3203.407 kb on - strand, within PS417_14660 at 3203.464 kb on - strand, within PS417_14660 at 3203.475 kb on + strand, within PS417_14660 at 3203.562 kb on + strand at 3203.562 kb on + strand at 3203.563 kb on - strand at 3203.611 kb on + strand at 3203.612 kb on - strand at 3203.722 kb on + strand at 3203.746 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1 remove 3,202,058 + +0.6 3,202,059 - +0.1 3,202,235 - -0.7 3,202,505 + PS417_14655 0.37 -0.8 3,203,040 + PS417_14660 0.13 -0.2 3,203,041 - PS417_14660 0.13 +0.2 3,203,053 - +0.6 3,203,124 + PS417_14660 0.26 -0.3 3,203,159 + +2.0 3,203,406 + PS417_14660 0.69 -0.2 3,203,406 + PS417_14660 0.69 -0.1 3,203,407 - PS417_14660 0.69 +0.1 3,203,464 - PS417_14660 0.77 -0.5 3,203,475 + PS417_14660 0.79 -0.1 3,203,562 + -0.2 3,203,562 + +0.1 3,203,563 - -0.2 3,203,611 + -0.5 3,203,612 - -0.6 3,203,722 + -0.9 3,203,746 + +0.6
Or see this region's nucleotide sequence