Strain Fitness in Pseudomonas simiae WCS417 around PS417_13620
Experiment: TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1 |
|---|---|---|---|---|---|
| remove | |||||
| 2,998,332 | + | PS417_13615 | 0.72 | +1.2 | |
| 2,998,649 | + | +0.2 | |||
| 2,998,863 | + | PS417_13620 | 0.18 | -0.2 | |
| 2,998,864 | - | PS417_13620 | 0.19 | -0.7 | |
| 2,999,357 | - | +0.2 | |||
| 2,999,622 | + | -0.2 | |||
| 2,999,622 | + | -0.9 | |||
| 2,999,623 | - | +0.1 | |||
| 2,999,679 | + | PS417_13625 | 0.15 | -0.8 | |
| 2,999,680 | - | PS417_13625 | 0.16 | -0.9 | |
| 2,999,867 | + | PS417_13625 | 0.50 | +0.3 | |
| 2,999,868 | - | PS417_13625 | 0.50 | -0.2 | |
| 2,999,883 | + | PS417_13625 | 0.53 | -0.3 | |
| 2,999,884 | - | PS417_13625 | 0.53 | -0.8 | |
| 3,000,217 | + | +0.2 | |||
| 3,000,218 | - | -0.4 |
Or see this region's nucleotide sequence