Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03990 and PS417_03995 are separated by 204 nucleotides PS417_03995 and PS417_04000 are separated by 2 nucleotides PS417_04000 and PS417_04005 are separated by 49 nucleotides
PS417_03990: PS417_03990 - ligand-gated channel protein, at 895,376 to 897,661
_03990
PS417_03995: PS417_03995 - Fe(II)-dependent oxygenase, at 897,866 to 898,546
_03995
PS417_04000: PS417_04000 - hypothetical protein, at 898,549 to 899,301
_04000
PS417_04005: PS417_04005 - ornithine decarboxylase, at 899,351 to 900,514
_04005
Position (kb) 897
898
899 Strain fitness (log2 ratio) -1
0
1 at 896.871 kb on + strand, within PS417_03990 at 896.874 kb on + strand, within PS417_03990 at 896.874 kb on + strand, within PS417_03990 at 896.874 kb on + strand, within PS417_03990 at 896.875 kb on - strand, within PS417_03990 at 896.875 kb on - strand, within PS417_03990 at 896.943 kb on + strand, within PS417_03990 at 897.246 kb on + strand, within PS417_03990 at 897.246 kb on + strand, within PS417_03990 at 897.468 kb on + strand at 897.639 kb on - strand at 897.698 kb on + strand at 898.075 kb on + strand, within PS417_03995 at 898.075 kb on + strand, within PS417_03995 at 898.075 kb on + strand, within PS417_03995 at 898.125 kb on - strand, within PS417_03995 at 898.125 kb on - strand, within PS417_03995 at 898.374 kb on - strand, within PS417_03995 at 898.511 kb on + strand at 898.512 kb on - strand at 898.512 kb on - strand at 898.559 kb on + strand at 898.560 kb on - strand at 898.788 kb on + strand, within PS417_04000 at 898.855 kb on + strand, within PS417_04000 at 898.894 kb on + strand, within PS417_04000 at 898.894 kb on + strand, within PS417_04000 at 898.895 kb on - strand, within PS417_04000 at 898.895 kb on - strand, within PS417_04000 at 898.895 kb on - strand, within PS417_04000 at 898.895 kb on - strand, within PS417_04000 at 898.895 kb on - strand, within PS417_04000 at 898.900 kb on + strand, within PS417_04000 at 898.900 kb on + strand, within PS417_04000 at 898.900 kb on + strand, within PS417_04000 at 898.901 kb on - strand, within PS417_04000 at 898.963 kb on + strand, within PS417_04000 at 899.117 kb on - strand, within PS417_04000 at 899.270 kb on - strand at 899.270 kb on - strand at 899.300 kb on - strand at 899.320 kb on + strand at 899.321 kb on - strand at 899.358 kb on + strand at 899.359 kb on - strand at 899.359 kb on - strand at 899.404 kb on - strand at 899.415 kb on + strand at 899.436 kb on + strand at 899.482 kb on - strand, within PS417_04005 at 899.490 kb on + strand, within PS417_04005 at 899.491 kb on - strand, within PS417_04005
Per-strain Table
Position Strand Gene LocusTag Fraction TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2 remove 896,871 + PS417_03990 0.65 -0.2 896,874 + PS417_03990 0.66 -0.1 896,874 + PS417_03990 0.66 +0.3 896,874 + PS417_03990 0.66 +0.2 896,875 - PS417_03990 0.66 +0.3 896,875 - PS417_03990 0.66 -0.0 896,943 + PS417_03990 0.69 -1.4 897,246 + PS417_03990 0.82 +0.2 897,246 + PS417_03990 0.82 -0.4 897,468 + -0.0 897,639 - -0.5 897,698 + +0.0 898,075 + PS417_03995 0.31 -0.1 898,075 + PS417_03995 0.31 -0.5 898,075 + PS417_03995 0.31 -1.2 898,125 - PS417_03995 0.38 -0.0 898,125 - PS417_03995 0.38 -0.8 898,374 - PS417_03995 0.75 -0.0 898,511 + +0.2 898,512 - -0.0 898,512 - -0.2 898,559 + +0.3 898,560 - +0.6 898,788 + PS417_04000 0.32 -0.0 898,855 + PS417_04000 0.41 -0.0 898,894 + PS417_04000 0.46 -0.0 898,894 + PS417_04000 0.46 -0.8 898,895 - PS417_04000 0.46 -0.0 898,895 - PS417_04000 0.46 -0.2 898,895 - PS417_04000 0.46 -0.2 898,895 - PS417_04000 0.46 +0.3 898,895 - PS417_04000 0.46 +0.1 898,900 + PS417_04000 0.47 +0.2 898,900 + PS417_04000 0.47 +0.2 898,900 + PS417_04000 0.47 -0.2 898,901 - PS417_04000 0.47 -0.4 898,963 + PS417_04000 0.55 +0.4 899,117 - PS417_04000 0.75 -0.2 899,270 - +1.1 899,270 - +0.6 899,300 - +0.1 899,320 + +0.1 899,321 - +0.1 899,358 + -0.0 899,359 - +0.2 899,359 - -0.8 899,404 - +0.4 899,415 + +0.4 899,436 + +0.2 899,482 - PS417_04005 0.11 +0.5 899,490 + PS417_04005 0.12 -0.1 899,491 - PS417_04005 0.12 +0.2
Or see this region's nucleotide sequence