Strain Fitness in Pseudomonas simiae WCS417 around PS417_28440
Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2 |
|---|---|---|---|---|---|
| remove | |||||
| 6,142,915 | + | PS417_28435 | 0.58 | +0.8 | |
| 6,142,916 | - | PS417_28435 | 0.58 | +0.5 | |
| 6,142,957 | + | PS417_28435 | 0.60 | -0.3 | |
| 6,142,958 | - | PS417_28435 | 0.60 | +0.1 | |
| 6,143,146 | + | PS417_28435 | 0.68 | -0.8 | |
| 6,143,146 | + | PS417_28435 | 0.68 | +0.5 | |
| 6,143,147 | - | PS417_28435 | 0.68 | +0.3 | |
| 6,143,303 | + | PS417_28435 | 0.75 | +0.1 | |
| 6,143,377 | + | PS417_28435 | 0.78 | -0.0 | |
| 6,143,377 | + | PS417_28435 | 0.78 | -0.0 | |
| 6,143,377 | + | PS417_28435 | 0.78 | -0.1 | |
| 6,143,378 | - | PS417_28435 | 0.78 | -1.1 | |
| 6,143,480 | - | PS417_28435 | 0.83 | +0.2 | |
| 6,143,571 | - | PS417_28435 | 0.87 | -0.4 | |
| 6,143,650 | + | +0.3 | |||
| 6,143,725 | + | -0.1 | |||
| 6,143,726 | - | -0.2 | |||
| 6,143,888 | + | -0.1 | |||
| 6,144,146 | + | PS417_28440 | 0.63 | -0.9 | |
| 6,144,179 | + | PS417_28440 | 0.72 | -0.1 | |
| 6,144,180 | - | PS417_28440 | 0.73 | -0.3 | |
| 6,144,341 | + | +0.2 | |||
| 6,144,342 | - | +0.2 |
Or see this region's nucleotide sequence