Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26475 and PS417_26480 are separated by 88 nucleotides PS417_26480 and PS417_26485 are separated by 191 nucleotides
PS417_26475: PS417_26475 - transglycosylase, at 5,725,138 to 5,726,322
_26475
PS417_26480: PS417_26480 - membrane protein, at 5,726,411 to 5,726,797
_26480
PS417_26485: PS417_26485 - sodium:proton antiporter, at 5,726,989 to 5,728,248
_26485
Position (kb) 5726
5727 Strain fitness (log2 ratio) -1
0
1 at 5725.469 kb on + strand, within PS417_26475 at 5725.470 kb on - strand, within PS417_26475 at 5725.513 kb on + strand, within PS417_26475 at 5725.514 kb on - strand, within PS417_26475 at 5725.593 kb on + strand, within PS417_26475 at 5725.611 kb on + strand at 5725.611 kb on + strand, within PS417_26475 at 5725.611 kb on + strand, within PS417_26475 at 5725.611 kb on + strand, within PS417_26475 at 5725.611 kb on + strand, within PS417_26475 at 5725.612 kb on - strand, within PS417_26475 at 5725.612 kb on - strand, within PS417_26475 at 5725.612 kb on - strand, within PS417_26475 at 5725.616 kb on - strand, within PS417_26475 at 5725.675 kb on + strand, within PS417_26475 at 5725.908 kb on + strand, within PS417_26475 at 5725.975 kb on + strand, within PS417_26475 at 5725.975 kb on + strand, within PS417_26475 at 5725.975 kb on + strand, within PS417_26475 at 5725.976 kb on - strand, within PS417_26475 at 5725.976 kb on - strand, within PS417_26475 at 5725.976 kb on - strand, within PS417_26475 at 5725.976 kb on - strand, within PS417_26475 at 5725.976 kb on - strand, within PS417_26475 at 5725.976 kb on - strand, within PS417_26475 at 5725.976 kb on - strand, within PS417_26475 at 5726.215 kb on - strand at 5726.345 kb on + strand at 5726.346 kb on - strand at 5726.413 kb on - strand at 5726.413 kb on - strand at 5726.421 kb on - strand at 5726.497 kb on - strand, within PS417_26480 at 5726.508 kb on + strand, within PS417_26480 at 5726.508 kb on + strand, within PS417_26480 at 5726.508 kb on + strand, within PS417_26480 at 5726.508 kb on + strand, within PS417_26480 at 5726.508 kb on + strand, within PS417_26480 at 5726.509 kb on - strand, within PS417_26480 at 5726.509 kb on - strand, within PS417_26480 at 5726.527 kb on + strand, within PS417_26480 at 5726.528 kb on - strand, within PS417_26480 at 5726.751 kb on + strand, within PS417_26480 at 5726.751 kb on + strand, within PS417_26480 at 5726.751 kb on + strand, within PS417_26480 at 5726.751 kb on + strand, within PS417_26480 at 5726.752 kb on - strand, within PS417_26480 at 5726.813 kb on + strand at 5726.814 kb on - strand at 5726.820 kb on - strand at 5726.838 kb on + strand at 5726.839 kb on - strand at 5726.897 kb on + strand at 5726.898 kb on - strand at 5727.037 kb on + strand at 5727.038 kb on - strand at 5727.038 kb on - strand at 5727.245 kb on + strand, within PS417_26485 at 5727.246 kb on - strand, within PS417_26485 at 5727.340 kb on + strand, within PS417_26485 at 5727.343 kb on + strand, within PS417_26485 at 5727.343 kb on + strand, within PS417_26485 at 5727.344 kb on - strand, within PS417_26485 at 5727.344 kb on - strand, within PS417_26485 at 5727.440 kb on + strand, within PS417_26485 at 5727.591 kb on - strand, within PS417_26485 at 5727.650 kb on - strand, within PS417_26485
Per-strain Table
Position Strand Gene LocusTag Fraction TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2 remove 5,725,469 + PS417_26475 0.28 -0.1 5,725,470 - PS417_26475 0.28 -0.1 5,725,513 + PS417_26475 0.32 -0.2 5,725,514 - PS417_26475 0.32 -0.2 5,725,593 + PS417_26475 0.38 +0.2 5,725,611 + +0.5 5,725,611 + PS417_26475 0.40 -0.3 5,725,611 + PS417_26475 0.40 +0.4 5,725,611 + PS417_26475 0.40 +0.3 5,725,611 + PS417_26475 0.40 +0.3 5,725,612 - PS417_26475 0.40 +0.1 5,725,612 - PS417_26475 0.40 -0.5 5,725,612 - PS417_26475 0.40 +0.0 5,725,616 - PS417_26475 0.40 -0.0 5,725,675 + PS417_26475 0.45 +0.3 5,725,908 + PS417_26475 0.65 -0.7 5,725,975 + PS417_26475 0.71 +0.1 5,725,975 + PS417_26475 0.71 +0.0 5,725,975 + PS417_26475 0.71 -0.1 5,725,976 - PS417_26475 0.71 -0.8 5,725,976 - PS417_26475 0.71 +1.1 5,725,976 - PS417_26475 0.71 -0.2 5,725,976 - PS417_26475 0.71 +0.2 5,725,976 - PS417_26475 0.71 +0.8 5,725,976 - PS417_26475 0.71 -0.5 5,725,976 - PS417_26475 0.71 -0.3 5,726,215 - +0.4 5,726,345 + +0.7 5,726,346 - -0.4 5,726,413 - -0.3 5,726,413 - +0.3 5,726,421 - +0.3 5,726,497 - PS417_26480 0.22 +0.2 5,726,508 + PS417_26480 0.25 -1.4 5,726,508 + PS417_26480 0.25 -0.6 5,726,508 + PS417_26480 0.25 +0.0 5,726,508 + PS417_26480 0.25 -0.7 5,726,508 + PS417_26480 0.25 +0.1 5,726,509 - PS417_26480 0.25 -1.4 5,726,509 - PS417_26480 0.25 +0.3 5,726,527 + PS417_26480 0.30 +1.1 5,726,528 - PS417_26480 0.30 -0.4 5,726,751 + PS417_26480 0.88 -0.7 5,726,751 + PS417_26480 0.88 +0.4 5,726,751 + PS417_26480 0.88 -0.9 5,726,751 + PS417_26480 0.88 -0.9 5,726,752 - PS417_26480 0.88 +0.5 5,726,813 + +0.1 5,726,814 - +0.3 5,726,820 - +0.2 5,726,838 + -0.9 5,726,839 - +1.0 5,726,897 + -0.1 5,726,898 - +0.3 5,727,037 + +0.3 5,727,038 - +0.0 5,727,038 - -0.5 5,727,245 + PS417_26485 0.20 -0.3 5,727,246 - PS417_26485 0.20 +0.3 5,727,340 + PS417_26485 0.28 +0.4 5,727,343 + PS417_26485 0.28 -0.9 5,727,343 + PS417_26485 0.28 +0.3 5,727,344 - PS417_26485 0.28 -0.6 5,727,344 - PS417_26485 0.28 -0.2 5,727,440 + PS417_26485 0.36 -0.0 5,727,591 - PS417_26485 0.48 -0.3 5,727,650 - PS417_26485 0.52 -0.1
Or see this region's nucleotide sequence