Strain Fitness in Pseudomonas simiae WCS417 around PS417_17845
Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2 |
|---|---|---|---|---|---|
| remove | |||||
| 3,896,542 | - | PS417_17840 | 0.84 | +0.3 | |
| 3,896,792 | - | -0.1 | |||
| 3,896,805 | - | -0.2 | |||
| 3,896,858 | + | +0.2 | |||
| 3,896,870 | - | -0.3 | |||
| 3,897,046 | + | PS417_17845 | 0.26 | -0.2 | |
| 3,897,088 | + | PS417_17845 | 0.31 | +0.9 | |
| 3,897,217 | + | PS417_17845 | 0.46 | -0.3 | |
| 3,897,217 | + | PS417_17845 | 0.46 | -0.0 | |
| 3,897,218 | - | PS417_17845 | 0.46 | -0.0 | |
| 3,898,271 | - | -0.5 | |||
| 3,898,271 | - | -0.0 | |||
| 3,898,354 | + | PS417_17855 | 0.14 | +0.5 | |
| 3,898,519 | + | PS417_17855 | 0.27 | -0.5 | |
| 3,898,520 | - | PS417_17855 | 0.27 | +0.0 | |
| 3,898,520 | - | PS417_17855 | 0.27 | +0.7 |
Or see this region's nucleotide sequence