Strain Fitness in Pseudomonas simiae WCS417 around PS417_17685
Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2 |
|---|---|---|---|---|---|
| remove | |||||
| 3,859,095 | + | +2.1 | |||
| 3,859,133 | - | -0.2 | |||
| 3,859,142 | + | +0.1 | |||
| 3,859,145 | + | -0.4 | |||
| 3,859,452 | - | PS417_17680 | 0.48 | +0.5 | |
| 3,859,452 | - | PS417_17680 | 0.48 | +0.2 | |
| 3,859,712 | + | PS417_17680 | 0.86 | -0.2 | |
| 3,859,712 | + | PS417_17680 | 0.86 | -1.9 | |
| 3,859,830 | - | +0.3 | |||
| 3,860,039 | + | PS417_17685 | 0.17 | -1.4 | |
| 3,860,285 | + | PS417_17685 | 0.36 | -0.4 | |
| 3,861,197 | + | -0.2 | |||
| 3,861,507 | - | PS417_17690 | 0.30 | -1.2 | |
| 3,861,684 | - | PS417_17690 | 0.42 | +0.1 |
Or see this region's nucleotide sequence