Strain Fitness in Pseudomonas simiae WCS417 around PS417_03945

Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03935 and PS417_03940 overlap by 4 nucleotidesPS417_03940 and PS417_03945 are separated by 113 nucleotidesPS417_03945 and PS417_03950 are separated by 126 nucleotidesPS417_03950 and PS417_03955 overlap by 54 nucleotides PS417_03935: PS417_03935 - N-acetyl-anhydromuranmyl-L-alanine amidase, at 879,415 to 879,978 _03935 PS417_03940: PS417_03940 - membrane protein, at 879,975 to 880,811 _03940 PS417_03945: PS417_03945 - chemotaxis protein, at 880,925 to 882,955 _03945 PS417_03950: PS417_03950 - hypothetical protein, at 883,082 to 883,513 _03950 PS417_03955: PS417_03955 - hydrolase TatD, at 883,460 to 884,236 _03955 Position (kb) 880 881 882 883Strain fitness (log2 ratio) -2 -1 0 1at 880.003 kb on + strandat 880.136 kb on - strand, within PS417_03940at 880.136 kb on - strand, within PS417_03940at 880.139 kb on - strand, within PS417_03940at 880.231 kb on - strand, within PS417_03940at 880.231 kb on - strand, within PS417_03940at 880.231 kb on - strand, within PS417_03940at 880.231 kb on - strandat 880.492 kb on - strand, within PS417_03940at 880.817 kb on + strandat 880.831 kb on + strandat 880.832 kb on - strandat 880.832 kb on - strandat 880.861 kb on + strandat 880.861 kb on + strandat 880.862 kb on - strandat 880.862 kb on - strandat 880.863 kb on + strandat 880.863 kb on + strandat 880.863 kb on + strandat 880.863 kb on + strandat 880.864 kb on - strandat 880.864 kb on - strandat 880.864 kb on - strandat 880.864 kb on - strandat 880.864 kb on - strandat 880.919 kb on + strandat 881.033 kb on + strandat 881.034 kb on - strandat 881.034 kb on - strandat 881.034 kb on - strandat 881.036 kb on + strandat 881.037 kb on - strandat 881.037 kb on - strandat 881.037 kb on - strandat 881.819 kb on + strand, within PS417_03945at 881.819 kb on + strand, within PS417_03945at 881.893 kb on + strand, within PS417_03945at 881.894 kb on - strand, within PS417_03945at 881.894 kb on - strand, within PS417_03945at 881.948 kb on + strand, within PS417_03945at 881.948 kb on + strand, within PS417_03945at 881.948 kb on + strand, within PS417_03945at 881.948 kb on + strand, within PS417_03945at 881.948 kb on + strand, within PS417_03945at 881.948 kb on + strand, within PS417_03945at 881.948 kb on + strand, within PS417_03945at 881.948 kb on + strand, within PS417_03945at 881.949 kb on - strand, within PS417_03945at 881.949 kb on - strand, within PS417_03945at 881.949 kb on - strandat 881.949 kb on - strand, within PS417_03945at 881.949 kb on - strand, within PS417_03945at 881.949 kb on - strand, within PS417_03945at 881.960 kb on + strand, within PS417_03945at 881.961 kb on - strand, within PS417_03945at 881.961 kb on - strand, within PS417_03945at 881.961 kb on - strand, within PS417_03945at 881.961 kb on - strand, within PS417_03945at 882.007 kb on + strand, within PS417_03945at 882.408 kb on + strand, within PS417_03945at 882.679 kb on + strand, within PS417_03945at 882.967 kb on - strandat 883.126 kb on + strandat 883.135 kb on + strand, within PS417_03950at 883.136 kb on - strand, within PS417_03950at 883.380 kb on + strand, within PS417_03950at 883.380 kb on + strand, within PS417_03950at 883.381 kb on - strand, within PS417_03950at 883.381 kb on - strand, within PS417_03950at 883.381 kb on - strand, within PS417_03950at 883.381 kb on - strand, within PS417_03950at 883.381 kb on - strand, within PS417_03950at 883.461 kb on + strandat 883.590 kb on + strand, within PS417_03955at 883.629 kb on - strand, within PS417_03955at 883.732 kb on - strand, within PS417_03955at 883.932 kb on + strand, within PS417_03955at 883.932 kb on + strand, within PS417_03955

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 2
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880,003 + -0.8
880,136 - PS417_03940 0.19 +0.4
880,136 - PS417_03940 0.19 -0.0
880,139 - PS417_03940 0.20 +0.1
880,231 - PS417_03940 0.31 +0.4
880,231 - PS417_03940 0.31 -0.2
880,231 - PS417_03940 0.31 -2.0
880,231 - -0.4
880,492 - PS417_03940 0.62 -0.1
880,817 + -0.4
880,831 + -0.4
880,832 - +0.1
880,832 - -0.1
880,861 + -0.4
880,861 + -0.1
880,862 - -0.3
880,862 - -0.3
880,863 + +0.7
880,863 + +0.2
880,863 + -0.3
880,863 + -0.6
880,864 - +0.1
880,864 - -0.2
880,864 - -0.0
880,864 - +0.4
880,864 - -0.3
880,919 + -0.1
881,033 + -0.2
881,034 - +0.6
881,034 - +0.0
881,034 - -0.7
881,036 + -0.5
881,037 - +0.3
881,037 - +0.4
881,037 - +0.7
881,819 + PS417_03945 0.44 -0.2
881,819 + PS417_03945 0.44 +0.3
881,893 + PS417_03945 0.48 -0.3
881,894 - PS417_03945 0.48 +0.2
881,894 - PS417_03945 0.48 -0.1
881,948 + PS417_03945 0.50 -0.5
881,948 + PS417_03945 0.50 +0.9
881,948 + PS417_03945 0.50 -0.3
881,948 + PS417_03945 0.50 -0.6
881,948 + PS417_03945 0.50 +1.4
881,948 + PS417_03945 0.50 -0.8
881,948 + PS417_03945 0.50 +0.1
881,948 + PS417_03945 0.50 -0.0
881,949 - PS417_03945 0.50 -0.5
881,949 - PS417_03945 0.50 -0.0
881,949 - +0.0
881,949 - PS417_03945 0.50 -0.1
881,949 - PS417_03945 0.50 +0.8
881,949 - PS417_03945 0.50 +0.6
881,960 + PS417_03945 0.51 -0.2
881,961 - PS417_03945 0.51 -1.1
881,961 - PS417_03945 0.51 +0.6
881,961 - PS417_03945 0.51 +0.9
881,961 - PS417_03945 0.51 -0.2
882,007 + PS417_03945 0.53 +0.0
882,408 + PS417_03945 0.73 +1.3
882,679 + PS417_03945 0.86 +0.3
882,967 - +0.1
883,126 + -1.8
883,135 + PS417_03950 0.12 +0.0
883,136 - PS417_03950 0.12 +1.3
883,380 + PS417_03950 0.69 -0.1
883,380 + PS417_03950 0.69 -0.2
883,381 - PS417_03950 0.69 -0.3
883,381 - PS417_03950 0.69 +0.1
883,381 - PS417_03950 0.69 +0.3
883,381 - PS417_03950 0.69 +0.4
883,381 - PS417_03950 0.69 +0.4
883,461 + +0.0
883,590 + PS417_03955 0.17 -0.2
883,629 - PS417_03955 0.22 -0.1
883,732 - PS417_03955 0.35 -0.4
883,932 + PS417_03955 0.61 -0.4
883,932 + PS417_03955 0.61 -0.2

Or see this region's nucleotide sequence