Strain Fitness in Pseudomonas simiae WCS417 around PS417_20730

Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_20720 and PS417_20725 overlap by 1 nucleotidesPS417_20725 and PS417_20730 are separated by 6 nucleotidesPS417_20730 and PS417_20735 overlap by 4 nucleotides PS417_20720: PS417_20720 - cbb3-type cytochrome c oxidase subunit I, at 4,503,759 to 4,505,201 _20720 PS417_20725: PS417_20725 - cbb3-type cytochrome c oxidase subunit II, at 4,505,201 to 4,505,809 _20725 PS417_20730: PS417_20730 - cytochrome oxidase, at 4,505,816 to 4,506,001 _20730 PS417_20735: PS417_20735 - cytochrome Cbb3, at 4,505,998 to 4,506,975 _20735 Position (kb) 4505 4506 4507Strain fitness (log2 ratio) -1 0 1at 4504.848 kb on + strandat 4504.944 kb on + strand, within PS417_20720at 4504.945 kb on - strand, within PS417_20720at 4505.061 kb on + strandat 4505.118 kb on + strandat 4505.119 kb on - strandat 4505.376 kb on - strand, within PS417_20725at 4505.573 kb on + strand, within PS417_20725at 4505.983 kb on + strandat 4506.020 kb on - strandat 4506.146 kb on - strand, within PS417_20735at 4506.818 kb on - strand, within PS417_20735at 4506.929 kb on - strandat 4506.929 kb on - strandat 4506.929 kb on - strandat 4506.935 kb on - strandat 4506.973 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 2
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4,504,848 + +0.5
4,504,944 + PS417_20720 0.82 -0.1
4,504,945 - PS417_20720 0.82 -0.3
4,505,061 + -0.3
4,505,118 + -0.4
4,505,119 - -0.1
4,505,376 - PS417_20725 0.29 +0.0
4,505,573 + PS417_20725 0.61 +0.5
4,505,983 + +0.2
4,506,020 - -0.9
4,506,146 - PS417_20735 0.15 +0.3
4,506,818 - PS417_20735 0.84 -0.1
4,506,929 - +0.2
4,506,929 - -0.1
4,506,929 - +0.1
4,506,935 - -0.5
4,506,973 + -0.5

Or see this region's nucleotide sequence