Strain Fitness in Pseudomonas simiae WCS417 around PS417_19455
Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 2 |
---|---|---|---|---|---|
remove | |||||
4,218,242 | + | PS417_19450 | 0.31 | -1.4 | |
4,218,242 | + | PS417_19450 | 0.31 | -0.7 | |
4,218,242 | + | PS417_19450 | 0.31 | +0.0 | |
4,218,243 | - | PS417_19450 | 0.31 | -0.6 | |
4,218,284 | - | PS417_19450 | 0.34 | -0.5 | |
4,218,284 | - | PS417_19450 | 0.34 | -1.4 | |
4,218,284 | - | PS417_19450 | 0.34 | -0.6 | |
4,218,825 | + | PS417_19450 | 0.82 | -0.5 | |
4,218,825 | + | PS417_19450 | 0.82 | -1.0 | |
4,218,825 | + | PS417_19450 | 0.82 | -0.5 | |
4,220,029 | + | -0.7 | |||
4,220,029 | + | -0.3 | |||
4,220,073 | + | -0.4 | |||
4,220,073 | + | +0.5 | |||
4,220,073 | + | +0.5 |
Or see this region's nucleotide sequence