Strain Fitness in Pseudomonas simiae WCS417 around PS417_04085

Experiment: TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04080 and PS417_04085 are separated by 258 nucleotidesPS417_04085 and PS417_04090 are separated by 90 nucleotides PS417_04080: PS417_04080 - peptide ABC transporter substrate-binding protein, at 916,371 to 917,999 _04080 PS417_04085: PS417_04085 - peptide ABC transporter substrate-binding protein, at 918,258 to 919,859 _04085 PS417_04090: PS417_04090 - hypothetical protein, at 919,950 to 920,663 _04090 Position (kb) 918 919 920Strain fitness (log2 ratio) -2 -1 0 1at 917.270 kb on + strand, within PS417_04080at 917.656 kb on - strand, within PS417_04080at 917.656 kb on - strand, within PS417_04080at 917.869 kb on + strandat 917.993 kb on + strandat 917.994 kb on - strandat 918.068 kb on - strandat 918.068 kb on - strandat 918.068 kb on - strandat 918.166 kb on - strandat 918.232 kb on + strandat 918.259 kb on + strandat 918.259 kb on + strandat 918.263 kb on + strandat 918.263 kb on + strandat 918.263 kb on + strandat 918.264 kb on - strandat 918.264 kb on - strandat 918.264 kb on - strandat 918.268 kb on - strandat 918.371 kb on + strandat 918.372 kb on - strandat 918.523 kb on + strand, within PS417_04085at 918.523 kb on + strand, within PS417_04085at 918.575 kb on - strand, within PS417_04085at 918.575 kb on - strand, within PS417_04085at 918.617 kb on - strand, within PS417_04085at 918.631 kb on + strand, within PS417_04085at 918.631 kb on + strand, within PS417_04085at 918.632 kb on - strand, within PS417_04085at 918.778 kb on - strand, within PS417_04085at 918.805 kb on + strandat 918.805 kb on + strand, within PS417_04085at 918.832 kb on + strand, within PS417_04085at 918.833 kb on - strand, within PS417_04085at 918.833 kb on - strand, within PS417_04085at 918.976 kb on + strand, within PS417_04085at 918.977 kb on - strand, within PS417_04085at 918.977 kb on - strand, within PS417_04085at 918.977 kb on - strand, within PS417_04085at 919.050 kb on - strand, within PS417_04085at 919.174 kb on + strand, within PS417_04085at 919.193 kb on - strand, within PS417_04085at 919.301 kb on - strand, within PS417_04085at 919.445 kb on - strand, within PS417_04085at 919.462 kb on + strand, within PS417_04085at 919.597 kb on + strand, within PS417_04085at 919.772 kb on - strandat 919.772 kb on - strandat 919.883 kb on + strandat 919.883 kb on + strandat 919.883 kb on + strandat 919.883 kb on + strandat 919.883 kb on + strandat 919.883 kb on + strandat 919.884 kb on - strandat 919.884 kb on - strandat 919.884 kb on - strandat 919.884 kb on - strandat 919.884 kb on - strandat 919.884 kb on - strandat 919.887 kb on + strandat 919.887 kb on + strandat 919.887 kb on + strandat 919.887 kb on + strandat 919.887 kb on + strandat 919.888 kb on - strandat 919.888 kb on - strandat 919.888 kb on - strandat 919.888 kb on - strandat 919.888 kb on - strandat 919.888 kb on - strandat 920.075 kb on - strand, within PS417_04090at 920.122 kb on + strand, within PS417_04090at 920.122 kb on + strand, within PS417_04090at 920.213 kb on + strand, within PS417_04090at 920.572 kb on + strand, within PS417_04090at 920.572 kb on + strand, within PS417_04090at 920.573 kb on - strand, within PS417_04090at 920.679 kb on + strandat 920.700 kb on + strandat 920.701 kb on - strandat 920.826 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 2
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917,270 + PS417_04080 0.55 -0.2
917,656 - PS417_04080 0.79 +0.5
917,656 - PS417_04080 0.79 +0.4
917,869 + +0.4
917,993 + -0.5
917,994 - +0.1
918,068 - -0.5
918,068 - +0.2
918,068 - +0.1
918,166 - +0.1
918,232 + +0.1
918,259 + +0.7
918,259 + +0.2
918,263 + -0.5
918,263 + +0.2
918,263 + +0.2
918,264 - +0.7
918,264 - -0.2
918,264 - -0.2
918,268 - +0.1
918,371 + -0.4
918,372 - +1.7
918,523 + PS417_04085 0.17 +0.0
918,523 + PS417_04085 0.17 -0.0
918,575 - PS417_04085 0.20 -0.1
918,575 - PS417_04085 0.20 -0.4
918,617 - PS417_04085 0.22 -1.1
918,631 + PS417_04085 0.23 -1.9
918,631 + PS417_04085 0.23 -0.0
918,632 - PS417_04085 0.23 +0.5
918,778 - PS417_04085 0.32 -0.6
918,805 + +0.3
918,805 + PS417_04085 0.34 +1.2
918,832 + PS417_04085 0.36 -0.5
918,833 - PS417_04085 0.36 -0.0
918,833 - PS417_04085 0.36 +0.0
918,976 + PS417_04085 0.45 -0.3
918,977 - PS417_04085 0.45 -0.8
918,977 - PS417_04085 0.45 +0.2
918,977 - PS417_04085 0.45 +0.1
919,050 - PS417_04085 0.49 -0.7
919,174 + PS417_04085 0.57 -0.2
919,193 - PS417_04085 0.58 -0.1
919,301 - PS417_04085 0.65 -0.2
919,445 - PS417_04085 0.74 +0.2
919,462 + PS417_04085 0.75 +0.1
919,597 + PS417_04085 0.84 +0.2
919,772 - -0.0
919,772 - -1.4
919,883 + -1.2
919,883 + -0.8
919,883 + -0.9
919,883 + -0.2
919,883 + +0.2
919,883 + -0.1
919,884 - -0.0
919,884 - -0.0
919,884 - -1.1
919,884 - -0.3
919,884 - +0.2
919,884 - +0.5
919,887 + +0.1
919,887 + -0.4
919,887 + -0.4
919,887 + +0.2
919,887 + -0.2
919,888 - +0.2
919,888 - +1.1
919,888 - -0.4
919,888 - -0.6
919,888 - +0.1
919,888 - +1.4
920,075 - PS417_04090 0.18 -0.0
920,122 + PS417_04090 0.24 +0.2
920,122 + PS417_04090 0.24 -0.1
920,213 + PS417_04090 0.37 -0.2
920,572 + PS417_04090 0.87 +0.1
920,572 + PS417_04090 0.87 -0.8
920,573 - PS417_04090 0.87 -0.1
920,679 + +0.0
920,700 + -1.2
920,701 - -0.8
920,826 + +0.1

Or see this region's nucleotide sequence