Strain Fitness in Pseudomonas simiae WCS417 around PS417_03475

Experiment: TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03470 and PS417_03475 overlap by 14 nucleotidesPS417_03475 and PS417_03480 overlap by 4 nucleotidesPS417_03480 and PS417_03485 overlap by 4 nucleotides PS417_03470: PS417_03470 - ATP synthase, at 798,058 to 799,416 _03470 PS417_03475: PS417_03475 - type III secretion protein, at 799,403 to 799,831 _03475 PS417_03480: PS417_03480 - type III secretion protein, at 799,828 to 800,286 _03480 PS417_03485: PS417_03485 - type III secretion protein, at 800,283 to 801,296 _03485 Position (kb) 799 800Strain fitness (log2 ratio) -2 -1 0 1at 798.743 kb on + strand, within PS417_03470at 799.015 kb on + strand, within PS417_03470at 799.015 kb on + strand, within PS417_03470at 799.016 kb on - strand, within PS417_03470at 799.232 kb on - strand, within PS417_03470at 799.402 kb on + strandat 799.402 kb on + strandat 799.403 kb on - strandat 799.617 kb on + strand, within PS417_03475at 799.618 kb on - strand, within PS417_03475at 799.618 kb on - strand, within PS417_03475at 799.800 kb on + strandat 799.800 kb on + strandat 800.096 kb on - strand, within PS417_03480at 800.610 kb on + strand, within PS417_03485at 800.722 kb on + strand, within PS417_03485at 800.723 kb on - strand, within PS417_03485

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 2
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798,743 + PS417_03470 0.50 +0.4
799,015 + PS417_03470 0.70 +0.6
799,015 + PS417_03470 0.70 +0.4
799,016 - PS417_03470 0.70 -0.1
799,232 - PS417_03470 0.86 -0.6
799,402 + -0.8
799,402 + -0.1
799,403 - +0.0
799,617 + PS417_03475 0.50 +0.2
799,618 - PS417_03475 0.50 +0.1
799,618 - PS417_03475 0.50 +1.1
799,800 + -0.8
799,800 + -2.2
800,096 - PS417_03480 0.58 +0.1
800,610 + PS417_03485 0.32 -0.0
800,722 + PS417_03485 0.43 -0.2
800,723 - PS417_03485 0.43 -0.2

Or see this region's nucleotide sequence