Experiment: TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26115 and PS417_26120 are separated by 79 nucleotides PS417_26120 and PS417_26125 are separated by 34 nucleotides PS417_26125 and PS417_26130 are separated by 94 nucleotides
PS417_26115: PS417_26115 - glutamine ABC transporter ATP-binding protein, at 5,644,513 to 5,645,238
_26115
PS417_26120: PS417_26120 - hypothetical protein, at 5,645,318 to 5,645,935
_26120
PS417_26125: PS417_26125 - glutathione S-transferase, at 5,645,970 to 5,646,599
_26125
PS417_26130: PS417_26130 - membrane protein, at 5,646,694 to 5,648,067
_26130
Position (kb) 5645
5646
5647 Strain fitness (log2 ratio) -1
0
1
2 at 5645.151 kb on + strand, within PS417_26115 at 5645.151 kb on + strand, within PS417_26115 at 5645.281 kb on - strand at 5645.299 kb on + strand at 5645.299 kb on + strand at 5645.300 kb on - strand at 5645.519 kb on + strand, within PS417_26120 at 5645.550 kb on + strand at 5645.811 kb on + strand, within PS417_26120 at 5645.812 kb on - strand, within PS417_26120 at 5645.898 kb on - strand at 5645.903 kb on + strand at 5645.904 kb on - strand at 5646.024 kb on - strand at 5646.202 kb on - strand, within PS417_26125 at 5646.484 kb on - strand, within PS417_26125 at 5646.608 kb on - strand at 5646.755 kb on + strand at 5646.768 kb on + strand at 5646.768 kb on + strand at 5646.768 kb on + strand at 5646.857 kb on + strand, within PS417_26130 at 5646.869 kb on + strand, within PS417_26130 at 5646.869 kb on + strand, within PS417_26130 at 5646.869 kb on + strand, within PS417_26130 at 5646.870 kb on - strand, within PS417_26130 at 5646.870 kb on - strand, within PS417_26130 at 5646.935 kb on + strand, within PS417_26130 at 5646.935 kb on + strand, within PS417_26130 at 5646.936 kb on - strand, within PS417_26130 at 5646.936 kb on - strand, within PS417_26130 at 5646.936 kb on - strand, within PS417_26130 at 5646.977 kb on + strand, within PS417_26130 at 5646.994 kb on + strand at 5646.994 kb on + strand, within PS417_26130 at 5646.994 kb on + strand, within PS417_26130 at 5646.994 kb on + strand, within PS417_26130 at 5646.994 kb on + strand at 5646.994 kb on + strand, within PS417_26130 at 5646.995 kb on - strand, within PS417_26130 at 5646.995 kb on - strand, within PS417_26130 at 5647.026 kb on - strand, within PS417_26130 at 5647.142 kb on + strand, within PS417_26130 at 5647.142 kb on + strand, within PS417_26130 at 5647.142 kb on + strand, within PS417_26130 at 5647.142 kb on + strand, within PS417_26130 at 5647.143 kb on - strand, within PS417_26130 at 5647.169 kb on + strand, within PS417_26130 at 5647.319 kb on - strand, within PS417_26130 at 5647.384 kb on + strand, within PS417_26130
Per-strain Table
Position Strand Gene LocusTag Fraction TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 2 remove 5,645,151 + PS417_26115 0.88 -0.3 5,645,151 + PS417_26115 0.88 +0.0 5,645,281 - +0.2 5,645,299 + -0.4 5,645,299 + -0.5 5,645,300 - -0.3 5,645,519 + PS417_26120 0.33 +0.3 5,645,550 + +0.2 5,645,811 + PS417_26120 0.80 -0.0 5,645,812 - PS417_26120 0.80 +0.3 5,645,898 - +0.9 5,645,903 + -0.1 5,645,904 - +0.2 5,646,024 - -0.5 5,646,202 - PS417_26125 0.37 +0.3 5,646,484 - PS417_26125 0.82 +0.2 5,646,608 - -0.2 5,646,755 + +1.7 5,646,768 + +0.1 5,646,768 + +0.0 5,646,768 + -0.2 5,646,857 + PS417_26130 0.12 -0.3 5,646,869 + PS417_26130 0.13 -0.5 5,646,869 + PS417_26130 0.13 -0.0 5,646,869 + PS417_26130 0.13 -0.1 5,646,870 - PS417_26130 0.13 -0.2 5,646,870 - PS417_26130 0.13 -0.0 5,646,935 + PS417_26130 0.18 +0.3 5,646,935 + PS417_26130 0.18 +0.3 5,646,936 - PS417_26130 0.18 +0.1 5,646,936 - PS417_26130 0.18 +0.5 5,646,936 - PS417_26130 0.18 +0.5 5,646,977 + PS417_26130 0.21 -0.8 5,646,994 + +1.1 5,646,994 + PS417_26130 0.22 -0.1 5,646,994 + PS417_26130 0.22 +0.5 5,646,994 + PS417_26130 0.22 -0.1 5,646,994 + +2.5 5,646,994 + PS417_26130 0.22 -0.4 5,646,995 - PS417_26130 0.22 +0.2 5,646,995 - PS417_26130 0.22 -0.3 5,647,026 - PS417_26130 0.24 -0.0 5,647,142 + PS417_26130 0.33 -0.3 5,647,142 + PS417_26130 0.33 -0.3 5,647,142 + PS417_26130 0.33 -0.1 5,647,142 + PS417_26130 0.33 +0.1 5,647,143 - PS417_26130 0.33 +0.2 5,647,169 + PS417_26130 0.35 +0.4 5,647,319 - PS417_26130 0.45 +0.3 5,647,384 + PS417_26130 0.50 +0.0
Or see this region's nucleotide sequence