Experiment: TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22155 and PS417_22160 are separated by 114 nucleotides PS417_22160 and PS417_22165 are separated by 52 nucleotides
PS417_22155: PS417_22155 - ATPase, at 4,800,333 to 4,801,178
_22155
PS417_22160: PS417_22160 - 3-beta hydroxysteroid dehydrogenase, at 4,801,293 to 4,802,291
_22160
PS417_22165: PS417_22165 - LysR family transcriptional regulator, at 4,802,344 to 4,803,237
_22165
Position (kb)
4801
4802
4803 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4800.414 kb on - strand at 4800.414 kb on - strand at 4800.453 kb on - strand, within PS417_22155 at 4800.533 kb on + strand, within PS417_22155 at 4801.163 kb on + strand at 4801.163 kb on + strand at 4801.180 kb on + strand at 4801.180 kb on + strand at 4801.180 kb on + strand at 4801.180 kb on + strand at 4801.180 kb on + strand at 4801.181 kb on - strand at 4801.181 kb on - strand at 4801.220 kb on + strand at 4801.221 kb on - strand at 4801.221 kb on - strand at 4801.295 kb on - strand at 4801.295 kb on - strand at 4801.372 kb on + strand at 4801.372 kb on + strand at 4801.511 kb on - strand, within PS417_22160 at 4801.570 kb on + strand, within PS417_22160 at 4801.570 kb on + strand, within PS417_22160 at 4801.570 kb on + strand, within PS417_22160 at 4801.571 kb on - strand, within PS417_22160 at 4801.571 kb on - strand, within PS417_22160 at 4801.619 kb on - strand, within PS417_22160 at 4801.945 kb on + strand, within PS417_22160 at 4801.946 kb on - strand, within PS417_22160 at 4802.051 kb on - strand, within PS417_22160 at 4802.051 kb on - strand, within PS417_22160 at 4802.051 kb on - strand, within PS417_22160 at 4802.290 kb on + strand at 4802.293 kb on + strand at 4802.293 kb on + strand at 4802.293 kb on + strand at 4802.294 kb on - strand at 4802.294 kb on - strand at 4802.294 kb on - strand at 4802.294 kb on - strand at 4802.294 kb on - strand at 4802.294 kb on - strand at 4802.294 kb on - strand at 4802.294 kb on - strand at 4802.297 kb on - strand at 4802.438 kb on + strand, within PS417_22165 at 4802.461 kb on - strand, within PS417_22165 at 4802.482 kb on + strand, within PS417_22165 at 4802.560 kb on - strand, within PS417_22165 at 4802.581 kb on + strand, within PS417_22165 at 4802.582 kb on - strand at 4802.582 kb on - strand, within PS417_22165 at 4802.624 kb on + strand, within PS417_22165 at 4803.226 kb on - strand at 4803.280 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 2 remove 4,800,414 - -0.1 4,800,414 - -0.3 4,800,453 - PS417_22155 0.14 -0.2 4,800,533 + PS417_22155 0.24 -0.1 4,801,163 + +0.2 4,801,163 + +0.8 4,801,180 + +0.2 4,801,180 + -0.3 4,801,180 + +0.5 4,801,180 + -0.4 4,801,180 + +0.8 4,801,181 - -0.1 4,801,181 - -0.4 4,801,220 + +0.3 4,801,221 - -0.2 4,801,221 - -0.3 4,801,295 - -0.3 4,801,295 - -0.0 4,801,372 + +0.6 4,801,372 + -0.2 4,801,511 - PS417_22160 0.22 -0.2 4,801,570 + PS417_22160 0.28 +0.0 4,801,570 + PS417_22160 0.28 +0.1 4,801,570 + PS417_22160 0.28 +0.8 4,801,571 - PS417_22160 0.28 +0.1 4,801,571 - PS417_22160 0.28 +0.7 4,801,619 - PS417_22160 0.33 +1.3 4,801,945 + PS417_22160 0.65 +0.4 4,801,946 - PS417_22160 0.65 +1.0 4,802,051 - PS417_22160 0.76 -0.2 4,802,051 - PS417_22160 0.76 +1.1 4,802,051 - PS417_22160 0.76 +0.6 4,802,290 + -0.2 4,802,293 + -0.4 4,802,293 + -0.8 4,802,293 + -0.1 4,802,294 - +3.4 4,802,294 - +0.1 4,802,294 - +0.6 4,802,294 - -0.2 4,802,294 - +0.1 4,802,294 - +0.5 4,802,294 - -0.1 4,802,294 - -0.2 4,802,297 - -0.1 4,802,438 + PS417_22165 0.11 +0.3 4,802,461 - PS417_22165 0.13 -0.5 4,802,482 + PS417_22165 0.15 +0.4 4,802,560 - PS417_22165 0.24 +0.2 4,802,581 + PS417_22165 0.27 -0.7 4,802,582 - +0.1 4,802,582 - PS417_22165 0.27 -0.1 4,802,624 + PS417_22165 0.31 +0.1 4,803,226 - -0.1 4,803,280 - -0.3
Or see this region's nucleotide sequence