Strain Fitness in Pseudomonas simiae WCS417 around PS417_21070
Experiment: TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 2 |
|---|---|---|---|---|---|
| remove | |||||
| 4,583,764 | + | PS417_21065 | 0.28 | +0.1 | |
| 4,583,765 | - | PS417_21065 | 0.28 | -0.0 | |
| 4,584,590 | - | +0.3 | |||
| 4,584,590 | - | +0.2 | |||
| 4,584,601 | - | -0.1 | |||
| 4,584,701 | - | +0.9 | |||
| 4,584,824 | - | -1.0 | |||
| 4,584,824 | - | -0.1 | |||
| 4,585,216 | + | PS417_21070 | 0.22 | +1.1 | |
| 4,585,409 | - | PS417_21070 | 0.30 | +0.3 | |
| 4,585,487 | - | PS417_21070 | 0.33 | -0.2 | |
| 4,585,487 | - | PS417_21070 | 0.33 | -0.4 | |
| 4,586,315 | - | PS417_21070 | 0.65 | +0.9 |
Or see this region's nucleotide sequence