Experiment: TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02030 and PS417_02035 overlap by 1 nucleotides PS417_02035 and PS417_02040 overlap by 4 nucleotides PS417_02040 and PS417_02045 overlap by 4 nucleotides
PS417_02030: PS417_02030 - 3-oxoacyl-ACP synthase, at 456,400 to 457,626
_02030
PS417_02035: PS417_02035 - 3-ketoacyl-ACP reductase, at 457,626 to 458,354
_02035
PS417_02040: PS417_02040 - 3-hydroxylacyl-ACP dehydratase, at 458,351 to 458,812
_02040
PS417_02045: PS417_02045 - 3-oxoacyl-ACP synthase, at 458,809 to 459,975
_02045
Position (kb) 458
459 Strain fitness (log2 ratio) -1
0
1 at 457.669 kb on + strand at 457.670 kb on - strand at 457.897 kb on + strand, within PS417_02035 at 457.898 kb on - strand, within PS417_02035 at 457.953 kb on - strand, within PS417_02035 at 458.009 kb on - strand, within PS417_02035 at 458.114 kb on - strand, within PS417_02035 at 458.378 kb on + strand at 458.379 kb on - strand at 458.408 kb on + strand, within PS417_02040 at 458.408 kb on + strand, within PS417_02040 at 458.409 kb on - strand, within PS417_02040 at 458.409 kb on - strand, within PS417_02040 at 458.914 kb on + strand at 458.914 kb on + strand at 458.915 kb on - strand at 459.234 kb on + strand, within PS417_02045 at 459.235 kb on - strand, within PS417_02045 at 459.599 kb on + strand, within PS417_02045 at 459.707 kb on + strand, within PS417_02045 at 459.708 kb on - strand, within PS417_02045
Per-strain Table
Position Strand Gene LocusTag Fraction TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 2 remove 457,669 + +0.7 457,670 - -0.1 457,897 + PS417_02035 0.37 -0.0 457,898 - PS417_02035 0.37 +1.1 457,953 - PS417_02035 0.45 -0.3 458,009 - PS417_02035 0.53 -0.6 458,114 - PS417_02035 0.67 -0.1 458,378 + +0.2 458,379 - +0.4 458,408 + PS417_02040 0.12 +0.6 458,408 + PS417_02040 0.12 +0.0 458,409 - PS417_02040 0.13 +0.5 458,409 - PS417_02040 0.13 +0.4 458,914 + -0.1 458,914 + -0.3 458,915 - +0.0 459,234 + PS417_02045 0.36 -0.0 459,235 - PS417_02045 0.37 -0.1 459,599 + PS417_02045 0.68 -1.4 459,707 + PS417_02045 0.77 -0.2 459,708 - PS417_02045 0.77 +0.2
Or see this region's nucleotide sequence