Experiment: TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_15055 and PS417_15060 are separated by 172 nucleotides PS417_15060 and PS417_15065 are separated by 17 nucleotides PS417_15065 and PS417_15070 are separated by 120 nucleotides PS417_15070 and PS417_15075 are separated by 54 nucleotides
PS417_15055: PS417_15055 - C4-dicarboxylate ABC transporter, at 3,289,749 to 3,291,059
_15055
PS417_15060: PS417_15060 - GntR family transcriptional regulator, at 3,291,232 to 3,291,933
_15060
PS417_15065: PS417_15065 - GntR family transcriptional regulator, at 3,291,951 to 3,292,643
_15065
PS417_15070: PS417_15070 - hypothetical protein, at 3,292,764 to 3,293,384
_15070
PS417_15075: PS417_15075 - NAD-glutamate dehydrogenase, at 3,293,439 to 3,298,307
_15075
Position (kb)
3291
3292
3293 Strain fitness (log2 ratio)
-1
0
1 at 3291.009 kb on + strand at 3291.010 kb on - strand at 3291.973 kb on - strand at 3292.035 kb on + strand at 3292.350 kb on + strand, within PS417_15065 at 3292.512 kb on + strand, within PS417_15065 at 3292.668 kb on - strand at 3292.757 kb on + strand at 3292.758 kb on - strand at 3292.821 kb on + strand at 3292.821 kb on + strand at 3292.821 kb on + strand at 3292.821 kb on + strand at 3292.821 kb on + strand at 3292.821 kb on + strand at 3292.822 kb on - strand at 3292.825 kb on + strand at 3292.825 kb on + strand at 3292.857 kb on + strand, within PS417_15070 at 3292.858 kb on - strand, within PS417_15070 at 3292.858 kb on - strand, within PS417_15070 at 3292.858 kb on - strand, within PS417_15070 at 3292.858 kb on - strand, within PS417_15070 at 3293.185 kb on + strand, within PS417_15070 at 3293.227 kb on - strand, within PS417_15070 at 3293.261 kb on - strand, within PS417_15070 at 3293.318 kb on - strand, within PS417_15070 at 3293.318 kb on - strand, within PS417_15070 at 3293.318 kb on - strand, within PS417_15070 at 3293.318 kb on - strand, within PS417_15070 at 3293.413 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 2 remove 3,291,009 + +0.3 3,291,010 - -0.0 3,291,973 - +1.1 3,292,035 + -0.0 3,292,350 + PS417_15065 0.58 -0.9 3,292,512 + PS417_15065 0.81 +0.1 3,292,668 - -0.2 3,292,757 + +0.2 3,292,758 - +0.0 3,292,821 + -0.2 3,292,821 + +0.5 3,292,821 + -0.2 3,292,821 + +0.4 3,292,821 + -0.4 3,292,821 + +0.3 3,292,822 - +0.1 3,292,825 + +0.6 3,292,825 + -0.7 3,292,857 + PS417_15070 0.15 +0.9 3,292,858 - PS417_15070 0.15 +0.2 3,292,858 - PS417_15070 0.15 +1.1 3,292,858 - PS417_15070 0.15 +0.8 3,292,858 - PS417_15070 0.15 -0.2 3,293,185 + PS417_15070 0.68 -0.5 3,293,227 - PS417_15070 0.75 -0.0 3,293,261 - PS417_15070 0.80 +0.3 3,293,318 - PS417_15070 0.89 -0.2 3,293,318 - PS417_15070 0.89 +0.2 3,293,318 - PS417_15070 0.89 -1.2 3,293,318 - PS417_15070 0.89 -0.2 3,293,413 - +1.1
Or see this region's nucleotide sequence