Experiment: TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01125 and PS417_01130 are separated by 108 nucleotides PS417_01130 and PS417_01135 are separated by 128 nucleotides PS417_01135 and PS417_01140 are separated by 14 nucleotides
PS417_01125: PS417_01125 - cysteine desulfhydrase, at 247,229 to 248,557
_01125
PS417_01130: PS417_01130 - L-glyceraldehyde 3-phosphate reductase, at 248,666 to 249,703
_01130
PS417_01135: PS417_01135 - taurine dioxygenase, at 249,832 to 250,668
_01135
PS417_01140: PS417_01140 - taurine ABC transporter permease, at 250,683 to 251,519
_01140
Position (kb) 248
249
250 Strain fitness (log2 ratio) -1
0
1 at 247.748 kb on - strand, within PS417_01125 at 247.748 kb on - strand, within PS417_01125 at 247.883 kb on + strand, within PS417_01125 at 247.884 kb on - strand, within PS417_01125 at 247.884 kb on - strand, within PS417_01125 at 247.884 kb on - strand, within PS417_01125 at 247.902 kb on - strand, within PS417_01125 at 247.902 kb on - strand, within PS417_01125 at 247.904 kb on + strand, within PS417_01125 at 248.103 kb on - strand, within PS417_01125 at 248.103 kb on - strand, within PS417_01125 at 248.297 kb on + strand, within PS417_01125 at 248.298 kb on - strand, within PS417_01125 at 248.352 kb on - strand, within PS417_01125 at 248.528 kb on + strand at 248.528 kb on + strand at 248.528 kb on + strand at 248.529 kb on - strand at 248.529 kb on - strand at 248.529 kb on - strand at 248.537 kb on + strand at 248.537 kb on + strand at 248.537 kb on + strand at 248.538 kb on - strand at 248.538 kb on - strand at 248.538 kb on - strand at 248.620 kb on - strand at 248.626 kb on - strand at 248.638 kb on + strand at 248.639 kb on - strand at 248.672 kb on + strand at 248.672 kb on + strand at 248.672 kb on + strand at 248.673 kb on - strand at 248.673 kb on - strand at 248.673 kb on - strand at 248.673 kb on - strand at 248.673 kb on - strand at 248.702 kb on - strand at 248.861 kb on + strand, within PS417_01130 at 248.862 kb on - strand, within PS417_01130 at 249.011 kb on + strand, within PS417_01130 at 249.011 kb on + strand, within PS417_01130 at 249.011 kb on + strand, within PS417_01130 at 249.254 kb on + strand, within PS417_01130 at 249.365 kb on + strand, within PS417_01130 at 249.365 kb on + strand, within PS417_01130 at 249.691 kb on + strand at 249.692 kb on - strand at 249.692 kb on - strand at 249.809 kb on + strand at 249.810 kb on - strand at 249.841 kb on + strand at 249.842 kb on - strand at 249.842 kb on - strand at 249.842 kb on - strand at 250.053 kb on + strand, within PS417_01135 at 250.054 kb on - strand, within PS417_01135 at 250.268 kb on + strand, within PS417_01135 at 250.269 kb on - strand, within PS417_01135 at 250.426 kb on + strand, within PS417_01135 at 250.427 kb on - strand, within PS417_01135 at 250.454 kb on + strand, within PS417_01135 at 250.651 kb on - strand at 250.668 kb on + strand at 250.669 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 2 remove 247,748 - PS417_01125 0.39 +0.1 247,748 - PS417_01125 0.39 +0.5 247,883 + PS417_01125 0.49 -0.5 247,884 - PS417_01125 0.49 +0.8 247,884 - PS417_01125 0.49 +0.0 247,884 - PS417_01125 0.49 -0.4 247,902 - PS417_01125 0.51 +0.6 247,902 - PS417_01125 0.51 +0.3 247,904 + PS417_01125 0.51 -0.2 248,103 - PS417_01125 0.66 -0.2 248,103 - PS417_01125 0.66 +0.6 248,297 + PS417_01125 0.80 -0.4 248,298 - PS417_01125 0.80 -0.5 248,352 - PS417_01125 0.84 +0.0 248,528 + -0.2 248,528 + -0.7 248,528 + -0.2 248,529 - -0.0 248,529 - -0.2 248,529 - +0.3 248,537 + +0.1 248,537 + -0.3 248,537 + +1.3 248,538 - +0.2 248,538 - -0.6 248,538 - -0.0 248,620 - +0.2 248,626 - +1.5 248,638 + -0.2 248,639 - +0.2 248,672 + +0.1 248,672 + +0.6 248,672 + +1.3 248,673 - -0.3 248,673 - -0.2 248,673 - +0.1 248,673 - -0.1 248,673 - +0.1 248,702 - +0.6 248,861 + PS417_01130 0.19 +0.5 248,862 - PS417_01130 0.19 +0.5 249,011 + PS417_01130 0.33 +0.6 249,011 + PS417_01130 0.33 -0.1 249,011 + PS417_01130 0.33 +0.8 249,254 + PS417_01130 0.57 +0.3 249,365 + PS417_01130 0.67 -0.9 249,365 + PS417_01130 0.67 +0.8 249,691 + -0.3 249,692 - +0.0 249,692 - +0.5 249,809 + +0.3 249,810 - +0.2 249,841 + -0.1 249,842 - +0.8 249,842 - +0.1 249,842 - -0.4 250,053 + PS417_01135 0.26 +0.0 250,054 - PS417_01135 0.27 +1.2 250,268 + PS417_01135 0.52 -1.2 250,269 - PS417_01135 0.52 +0.4 250,426 + PS417_01135 0.71 -0.0 250,427 - PS417_01135 0.71 -0.2 250,454 + PS417_01135 0.74 +0.2 250,651 - +0.4 250,668 + +0.3 250,669 - +0.1
Or see this region's nucleotide sequence