Strain Fitness in Pseudomonas simiae WCS417 around PS417_10810
Experiment: TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 2 |
---|---|---|---|---|---|
remove | |||||
2,310,070 | + | PS417_10805 | 0.62 | -0.1 | |
2,310,071 | - | +0.6 | |||
2,310,423 | + | PS417_10805 | 0.78 | -0.1 | |
2,310,454 | + | PS417_10805 | 0.80 | +0.1 | |
2,310,926 | + | +0.5 | |||
2,310,947 | + | -0.1 | |||
2,311,005 | + | +0.2 | |||
2,311,005 | + | +0.1 | |||
2,311,107 | + | PS417_10810 | 0.16 | -0.0 | |
2,311,107 | + | +0.0 | |||
2,311,108 | - | PS417_10810 | 0.17 | -1.2 | |
2,311,259 | + | PS417_10810 | 0.73 | -0.3 | |
2,311,340 | - | -3.1 | |||
2,311,457 | - | -1.6 | |||
2,311,550 | + | -0.4 | |||
2,311,550 | + | +0.4 | |||
2,311,560 | + | +0.2 | |||
2,311,560 | + | +0.0 | |||
2,311,561 | - | -0.3 | |||
2,311,592 | + | +0.1 | |||
2,311,593 | - | -0.2 | |||
2,311,904 | - | PS417_10815 | 0.41 | -0.4 | |
2,312,120 | + | PS417_10815 | 0.73 | +0.2 | |
2,312,120 | + | PS417_10815 | 0.73 | +0.5 | |
2,312,121 | - | PS417_10815 | 0.73 | -0.0 | |
2,312,140 | + | PS417_10815 | 0.76 | +0.7 | |
2,312,331 | - | +0.0 |
Or see this region's nucleotide sequence