Strain Fitness in Pseudomonas simiae WCS417 around PS417_01045

Experiment: TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01040 and PS417_01045 overlap by 4 nucleotidesPS417_01045 and PS417_01050 overlap by 4 nucleotides PS417_01040: PS417_01040 - RND transporter, at 226,180 to 227,262 _01040 PS417_01045: PS417_01045 - RND transporter, at 227,259 to 228,329 _01045 PS417_01050: PS417_01050 - ACR family transporter, at 228,326 to 231,391 _01050 Position (kb) 227 228 229Strain fitness (log2 ratio) -1 0 1 2at 226.339 kb on - strand, within PS417_01040at 226.542 kb on - strand, within PS417_01040at 226.570 kb on + strand, within PS417_01040at 226.570 kb on + strand, within PS417_01040at 226.570 kb on + strand, within PS417_01040at 226.571 kb on - strand, within PS417_01040at 226.746 kb on - strand, within PS417_01040at 226.811 kb on - strand, within PS417_01040at 226.811 kb on - strand, within PS417_01040at 226.811 kb on - strand, within PS417_01040at 226.929 kb on + strand, within PS417_01040at 227.583 kb on + strand, within PS417_01045at 227.583 kb on + strand, within PS417_01045at 227.583 kb on + strand, within PS417_01045at 227.584 kb on - strand, within PS417_01045at 227.584 kb on - strandat 228.384 kb on - strandat 228.423 kb on - strandat 228.573 kb on - strandat 228.573 kb on - strandat 228.751 kb on - strand, within PS417_01050at 228.751 kb on - strand, within PS417_01050at 228.764 kb on + strand, within PS417_01050at 228.893 kb on + strand, within PS417_01050at 229.094 kb on + strand, within PS417_01050at 229.130 kb on + strand, within PS417_01050at 229.130 kb on + strand, within PS417_01050at 229.131 kb on - strand, within PS417_01050

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 2
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226,339 - PS417_01040 0.15 -0.1
226,542 - PS417_01040 0.33 +0.4
226,570 + PS417_01040 0.36 +0.7
226,570 + PS417_01040 0.36 -0.2
226,570 + PS417_01040 0.36 -0.7
226,571 - PS417_01040 0.36 -0.1
226,746 - PS417_01040 0.52 +0.0
226,811 - PS417_01040 0.58 -0.3
226,811 - PS417_01040 0.58 -0.3
226,811 - PS417_01040 0.58 -0.0
226,929 + PS417_01040 0.69 -0.5
227,583 + PS417_01045 0.30 +0.2
227,583 + PS417_01045 0.30 +0.2
227,583 + PS417_01045 0.30 -0.1
227,584 - PS417_01045 0.30 +1.9
227,584 - -1.3
228,384 - -0.1
228,423 - -1.1
228,573 - +0.1
228,573 - -0.4
228,751 - PS417_01050 0.14 -0.2
228,751 - PS417_01050 0.14 +0.2
228,764 + PS417_01050 0.14 -0.5
228,893 + PS417_01050 0.18 +0.5
229,094 + PS417_01050 0.25 -0.1
229,130 + PS417_01050 0.26 +0.7
229,130 + PS417_01050 0.26 -0.6
229,131 - PS417_01050 0.26 +0.1

Or see this region's nucleotide sequence