Experiment: TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01000 and PS417_01005 are separated by 126 nucleotides PS417_01005 and PS417_01015 are separated by 484 nucleotides
PS417_01000: PS417_01000 - Fis family transcriptional regulator, at 219,549 to 220,475
_01000
PS417_01005: PS417_01005 - methionine ABC transporter substrate-binding protein, at 220,602 to 221,384
_01005
PS417_01015: PS417_01015 - polar amino acid ABC transporter permease, at 221,869 to 222,534
_01015
Position (kb) 220
221
222 Strain fitness (log2 ratio) -1
0
1 at 219.822 kb on + strand, within PS417_01000 at 219.921 kb on + strand, within PS417_01000 at 219.922 kb on - strand, within PS417_01000 at 219.961 kb on + strand, within PS417_01000 at 220.111 kb on - strand, within PS417_01000 at 220.111 kb on - strand, within PS417_01000 at 220.182 kb on + strand, within PS417_01000 at 220.182 kb on + strand, within PS417_01000 at 220.182 kb on + strand, within PS417_01000 at 220.197 kb on + strand, within PS417_01000 at 220.197 kb on + strand, within PS417_01000 at 220.197 kb on + strand, within PS417_01000 at 220.510 kb on + strand at 220.510 kb on + strand at 220.510 kb on + strand at 220.510 kb on + strand at 220.510 kb on + strand at 220.511 kb on - strand at 220.511 kb on - strand at 220.511 kb on - strand at 220.547 kb on - strand at 220.780 kb on - strand, within PS417_01005 at 220.827 kb on + strand, within PS417_01005 at 220.828 kb on - strand, within PS417_01005 at 221.181 kb on + strand, within PS417_01005 at 221.387 kb on + strand at 221.425 kb on - strand at 221.425 kb on - strand at 221.588 kb on - strand at 221.694 kb on + strand at 221.694 kb on + strand at 221.694 kb on + strand at 221.694 kb on + strand at 221.695 kb on - strand at 221.695 kb on - strand at 221.695 kb on - strand at 221.695 kb on - strand at 221.844 kb on + strand at 221.889 kb on + strand at 221.889 kb on + strand at 222.040 kb on + strand, within PS417_01015 at 222.091 kb on + strand, within PS417_01015
Per-strain Table
Position Strand Gene LocusTag Fraction TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 2 remove 219,822 + PS417_01000 0.29 -0.6 219,921 + PS417_01000 0.40 -0.2 219,922 - PS417_01000 0.40 +0.3 219,961 + PS417_01000 0.44 -0.2 220,111 - PS417_01000 0.61 +0.0 220,111 - PS417_01000 0.61 -0.2 220,182 + PS417_01000 0.68 -0.1 220,182 + PS417_01000 0.68 +0.4 220,182 + PS417_01000 0.68 +0.5 220,197 + PS417_01000 0.70 -0.2 220,197 + PS417_01000 0.70 -0.2 220,197 + PS417_01000 0.70 -0.2 220,510 + +0.6 220,510 + +0.2 220,510 + -0.2 220,510 + -0.1 220,510 + -0.3 220,511 - +0.2 220,511 - -0.0 220,511 - -0.4 220,547 - -0.1 220,780 - PS417_01005 0.23 +0.2 220,827 + PS417_01005 0.29 +1.0 220,828 - PS417_01005 0.29 -0.4 221,181 + PS417_01005 0.74 +0.9 221,387 + -0.0 221,425 - -0.7 221,425 - +0.0 221,588 - -0.3 221,694 + -0.3 221,694 + -0.2 221,694 + +0.2 221,694 + -0.3 221,695 - -0.6 221,695 - -0.4 221,695 - -0.2 221,695 - +0.4 221,844 + +0.2 221,889 + -0.2 221,889 + -0.3 222,040 + PS417_01015 0.26 +0.1 222,091 + PS417_01015 0.33 +0.3
Or see this region's nucleotide sequence