Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23595 and PS417_23600 are separated by 1 nucleotides PS417_23600 and PS417_23605 are separated by 12 nucleotides PS417_23605 and PS417_23610 are separated by 194 nucleotides PS417_23610 and PS417_23615 are separated by 122 nucleotides
PS417_23595: PS417_23595 - D-aminoacylase, at 5,102,630 to 5,104,093
_23595
PS417_23600: PS417_23600 - RpiR family transcriptional regulator, at 5,104,095 to 5,104,955
_23600
PS417_23605: PS417_23605 - permease DsdX, at 5,104,968 to 5,106,371
_23605
PS417_23610: PS417_23610 - hypothetical protein, at 5,106,566 to 5,106,946
_23610
PS417_23615: PS417_23615 - sulfate transporter, at 5,107,069 to 5,108,514
_23615
Position (kb) 5104
5105
5106
5107 Strain fitness (log2 ratio) -2
-1
0
1 at 5104.029 kb on - strand at 5104.032 kb on + strand at 5104.032 kb on + strand at 5104.032 kb on + strand at 5104.032 kb on + strand at 5104.032 kb on + strand at 5104.086 kb on + strand at 5104.087 kb on - strand at 5104.093 kb on + strand at 5104.257 kb on - strand, within PS417_23600 at 5104.258 kb on + strand, within PS417_23600 at 5104.258 kb on + strand at 5104.258 kb on + strand, within PS417_23600 at 5104.258 kb on + strand, within PS417_23600 at 5104.258 kb on + strand, within PS417_23600 at 5104.258 kb on + strand, within PS417_23600 at 5104.259 kb on - strand, within PS417_23600 at 5104.259 kb on - strand, within PS417_23600 at 5104.259 kb on - strand, within PS417_23600 at 5104.259 kb on - strand, within PS417_23600 at 5104.262 kb on + strand, within PS417_23600 at 5104.358 kb on - strand, within PS417_23600 at 5104.398 kb on - strand, within PS417_23600 at 5104.991 kb on - strand at 5105.066 kb on + strand at 5105.067 kb on - strand at 5105.453 kb on + strand, within PS417_23605 at 5105.622 kb on - strand, within PS417_23605 at 5105.768 kb on - strand, within PS417_23605 at 5105.768 kb on - strand, within PS417_23605 at 5105.768 kb on - strand, within PS417_23605 at 5105.797 kb on + strand, within PS417_23605 at 5105.798 kb on - strand, within PS417_23605 at 5105.798 kb on - strand, within PS417_23605 at 5106.283 kb on + strand at 5106.284 kb on - strand at 5106.284 kb on - strand at 5106.480 kb on + strand at 5106.480 kb on + strand at 5106.480 kb on + strand at 5106.480 kb on + strand at 5106.480 kb on + strand at 5106.481 kb on - strand at 5106.481 kb on - strand at 5106.481 kb on - strand at 5106.530 kb on - strand at 5106.530 kb on - strand at 5106.595 kb on + strand at 5106.635 kb on - strand, within PS417_23610 at 5106.740 kb on + strand, within PS417_23610 at 5106.740 kb on + strand, within PS417_23610 at 5106.740 kb on + strand at 5106.811 kb on - strand, within PS417_23610 at 5106.815 kb on + strand at 5106.815 kb on + strand, within PS417_23610 at 5106.962 kb on + strand at 5107.056 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1 remove 5,104,029 - -0.1 5,104,032 + +0.0 5,104,032 + -0.2 5,104,032 + -0.1 5,104,032 + -0.4 5,104,032 + +1.0 5,104,086 + +0.0 5,104,087 - -0.7 5,104,093 + +0.2 5,104,257 - PS417_23600 0.19 -0.1 5,104,258 + PS417_23600 0.19 -0.2 5,104,258 + -1.8 5,104,258 + PS417_23600 0.19 -0.2 5,104,258 + PS417_23600 0.19 -0.3 5,104,258 + PS417_23600 0.19 -0.5 5,104,258 + PS417_23600 0.19 +0.1 5,104,259 - PS417_23600 0.19 +0.8 5,104,259 - PS417_23600 0.19 +0.8 5,104,259 - PS417_23600 0.19 -0.0 5,104,259 - PS417_23600 0.19 -0.3 5,104,262 + PS417_23600 0.19 +0.6 5,104,358 - PS417_23600 0.31 -0.3 5,104,398 - PS417_23600 0.35 -0.4 5,104,991 - +1.6 5,105,066 + +0.3 5,105,067 - -0.2 5,105,453 + PS417_23605 0.35 +0.3 5,105,622 - PS417_23605 0.47 +1.7 5,105,768 - PS417_23605 0.57 +1.6 5,105,768 - PS417_23605 0.57 -0.3 5,105,768 - PS417_23605 0.57 -0.0 5,105,797 + PS417_23605 0.59 +0.4 5,105,798 - PS417_23605 0.59 +0.3 5,105,798 - PS417_23605 0.59 +1.0 5,106,283 + +0.7 5,106,284 - -1.0 5,106,284 - -0.7 5,106,480 + +0.1 5,106,480 + -0.1 5,106,480 + -0.8 5,106,480 + +0.4 5,106,480 + -0.0 5,106,481 - +0.8 5,106,481 - -0.8 5,106,481 - +0.3 5,106,530 - +0.5 5,106,530 - -0.3 5,106,595 + +0.0 5,106,635 - PS417_23610 0.18 +0.0 5,106,740 + PS417_23610 0.46 +0.2 5,106,740 + PS417_23610 0.46 +0.4 5,106,740 + -0.1 5,106,811 - PS417_23610 0.64 -0.5 5,106,815 + +1.4 5,106,815 + PS417_23610 0.65 -0.0 5,106,962 + -0.4 5,107,056 + +0.9
Or see this region's nucleotide sequence