Strain Fitness in Pseudomonas simiae WCS417 around PS417_23015
Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1 |
---|---|---|---|---|---|
remove | |||||
4,983,325 | + | PS417_23005 | 0.14 | -0.6 | |
4,983,325 | + | PS417_23005 | 0.14 | -0.8 | |
4,983,326 | - | PS417_23005 | 0.15 | -0.2 | |
4,983,348 | + | PS417_23005 | 0.22 | +0.9 | |
4,983,520 | + | PS417_23005 | 0.82 | -0.5 | |
4,983,536 | + | PS417_23005 | 0.88 | +0.2 | |
4,983,629 | + | -0.5 | |||
4,983,629 | + | -1.4 | |||
4,983,629 | + | -0.6 | |||
4,983,629 | + | -0.9 | |||
4,983,630 | - | -1.1 | |||
4,983,630 | - | -0.1 | |||
4,983,630 | - | +0.1 | |||
4,983,654 | + | -0.1 | |||
4,983,754 | + | -0.1 | |||
4,983,825 | - | -0.5 | |||
4,983,842 | + | +0.2 | |||
4,983,843 | - | +0.6 | |||
4,983,907 | + | -0.2 | |||
4,983,931 | + | -0.2 | |||
4,983,932 | - | -0.4 | |||
4,983,932 | - | -0.3 | |||
4,984,110 | - | +0.1 | |||
4,984,150 | + | -0.0 | |||
4,984,166 | - | PS417_23015 | 0.14 | -0.5 | |
4,984,166 | - | PS417_23015 | 0.14 | -0.6 | |
4,984,342 | + | PS417_23015 | 0.71 | -0.8 | |
4,984,343 | - | PS417_23015 | 0.71 | -0.1 | |
4,984,429 | + | -0.4 | |||
4,984,430 | - | +0.9 | |||
4,984,439 | + | +0.2 |
Or see this region's nucleotide sequence