Strain Fitness in Pseudomonas simiae WCS417 around PS417_02270
Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1 |
---|---|---|---|---|---|
remove | |||||
517,246 | + | PS417_02265 | 0.88 | -0.7 | |
517,247 | - | PS417_02265 | 0.88 | -0.5 | |
517,247 | - | PS417_02265 | 0.88 | -0.1 | |
517,464 | + | +0.6 | |||
517,532 | + | +0.1 | |||
517,533 | - | -0.2 | |||
517,631 | - | -2.1 | |||
517,633 | + | -0.1 | |||
517,633 | + | +0.7 | |||
517,672 | + | +0.1 | |||
517,689 | + | +0.1 | |||
517,689 | + | -0.3 | |||
517,705 | + | -0.1 | |||
517,706 | - | +0.4 | |||
517,714 | + | -0.1 | |||
517,715 | - | +0.2 | |||
517,746 | + | +0.0 | |||
517,746 | + | -0.3 | |||
517,747 | - | +0.4 | |||
517,994 | + | +0.7 | |||
517,995 | - | -0.5 | |||
518,027 | - | +0.2 | |||
518,079 | - | -0.5 | |||
518,147 | + | -0.2 | |||
518,147 | + | +0.1 | |||
518,156 | + | -0.1 | |||
518,156 | + | -0.3 | |||
518,235 | + | -1.3 | |||
518,721 | + | PS417_02270 | 0.31 | -1.2 | |
518,721 | + | PS417_02270 | 0.31 | -0.7 | |
518,922 | + | PS417_02270 | 0.42 | -2.7 | |
519,012 | + | PS417_02270 | 0.48 | -1.0 | |
519,012 | + | PS417_02270 | 0.48 | -0.7 | |
519,012 | + | PS417_02270 | 0.48 | +0.1 | |
519,240 | + | PS417_02270 | 0.61 | -0.5 | |
519,732 | + | PS417_02270 | 0.89 | -0.9 | |
520,642 | - | PS417_02275 | 0.79 | +1.5 | |
520,825 | + | -0.2 | |||
520,825 | + | -0.8 |
Or see this region's nucleotide sequence