Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21375 and PS417_21380 overlap by 4 nucleotides PS417_21380 and PS417_21385 are separated by 64 nucleotides PS417_21385 and PS417_21390 are separated by 16 nucleotides
PS417_21375: PS417_21375 - ADP-ribosylglycohydrolase, at 4,643,889 to 4,644,890
_21375
PS417_21380: PS417_21380 - GntR family transcriptional regulator, at 4,644,887 to 4,645,606
_21380
PS417_21385: PS417_21385 - hypothetical protein, at 4,645,671 to 4,646,231
_21385
PS417_21390: PS417_21390 - hypothetical protein, at 4,646,248 to 4,646,853
_21390
Position (kb) 4644
4645
4646 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4644.243 kb on - strand, within PS417_21375 at 4644.428 kb on + strand, within PS417_21375 at 4644.429 kb on - strand, within PS417_21375 at 4644.740 kb on + strand, within PS417_21375 at 4644.741 kb on - strand, within PS417_21375 at 4644.856 kb on + strand at 4644.951 kb on + strand at 4644.951 kb on + strand at 4644.952 kb on - strand at 4644.952 kb on - strand at 4644.952 kb on - strand at 4644.978 kb on + strand, within PS417_21380 at 4644.978 kb on + strand, within PS417_21380 at 4644.978 kb on + strand, within PS417_21380 at 4644.978 kb on + strand, within PS417_21380 at 4644.979 kb on - strand, within PS417_21380 at 4644.979 kb on - strand, within PS417_21380 at 4644.979 kb on - strand, within PS417_21380 at 4645.091 kb on - strand, within PS417_21380 at 4645.098 kb on + strand, within PS417_21380 at 4645.420 kb on - strand, within PS417_21380 at 4645.603 kb on - strand at 4645.771 kb on + strand, within PS417_21385 at 4645.772 kb on - strand, within PS417_21385 at 4645.772 kb on - strand, within PS417_21385 at 4645.921 kb on - strand, within PS417_21385 at 4645.921 kb on - strand, within PS417_21385 at 4646.020 kb on + strand, within PS417_21385 at 4646.021 kb on - strand, within PS417_21385 at 4646.095 kb on + strand at 4646.163 kb on + strand, within PS417_21385 at 4646.164 kb on - strand, within PS417_21385 at 4646.164 kb on - strand, within PS417_21385 at 4646.232 kb on - strand at 4646.249 kb on + strand at 4646.249 kb on + strand at 4646.250 kb on - strand at 4646.358 kb on + strand, within PS417_21390 at 4646.367 kb on + strand, within PS417_21390 at 4646.368 kb on - strand, within PS417_21390 at 4646.378 kb on + strand, within PS417_21390 at 4646.507 kb on + strand, within PS417_21390 at 4646.508 kb on - strand, within PS417_21390 at 4646.508 kb on - strand, within PS417_21390 at 4646.516 kb on + strand, within PS417_21390 at 4646.516 kb on + strand, within PS417_21390
Per-strain Table
Position Strand Gene LocusTag Fraction TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1 remove 4,644,243 - PS417_21375 0.35 -0.1 4,644,428 + PS417_21375 0.54 +1.1 4,644,429 - PS417_21375 0.54 +0.1 4,644,740 + PS417_21375 0.85 +0.0 4,644,741 - PS417_21375 0.85 -0.6 4,644,856 + -0.2 4,644,951 + -0.0 4,644,951 + +0.5 4,644,952 - -0.4 4,644,952 - +0.1 4,644,952 - +1.0 4,644,978 + PS417_21380 0.13 -0.0 4,644,978 + PS417_21380 0.13 -0.9 4,644,978 + PS417_21380 0.13 -3.0 4,644,978 + PS417_21380 0.13 +2.0 4,644,979 - PS417_21380 0.13 -1.0 4,644,979 - PS417_21380 0.13 -0.0 4,644,979 - PS417_21380 0.13 +0.9 4,645,091 - PS417_21380 0.28 +0.0 4,645,098 + PS417_21380 0.29 -0.8 4,645,420 - PS417_21380 0.74 +0.5 4,645,603 - -0.5 4,645,771 + PS417_21385 0.18 -1.2 4,645,772 - PS417_21385 0.18 +0.7 4,645,772 - PS417_21385 0.18 -0.3 4,645,921 - PS417_21385 0.45 -0.3 4,645,921 - PS417_21385 0.45 +1.2 4,646,020 + PS417_21385 0.62 -0.3 4,646,021 - PS417_21385 0.62 +1.4 4,646,095 + -1.9 4,646,163 + PS417_21385 0.88 -0.1 4,646,164 - PS417_21385 0.88 +0.8 4,646,164 - PS417_21385 0.88 -0.5 4,646,232 - -0.3 4,646,249 + -0.1 4,646,249 + -0.1 4,646,250 - -0.2 4,646,358 + PS417_21390 0.18 +0.2 4,646,367 + PS417_21390 0.20 +1.5 4,646,368 - PS417_21390 0.20 -0.7 4,646,378 + PS417_21390 0.21 +0.8 4,646,507 + PS417_21390 0.43 +0.1 4,646,508 - PS417_21390 0.43 +0.3 4,646,508 - PS417_21390 0.43 -0.0 4,646,516 + PS417_21390 0.44 -1.1 4,646,516 + PS417_21390 0.44 -0.9
Or see this region's nucleotide sequence