Strain Fitness in Pseudomonas simiae WCS417 around PS417_15735

Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_15730 and PS417_15735 are separated by 307 nucleotidesPS417_15735 and PS417_15740 overlap by 4 nucleotidesPS417_15740 and PS417_15745 are separated by 73 nucleotides PS417_15730: PS417_15730 - major facilitator transporter, at 3,449,317 to 3,450,567 _15730 PS417_15735: PS417_15735 - histidine kinase, at 3,450,875 to 3,452,677 _15735 PS417_15740: PS417_15740 - hypothetical protein, at 3,452,674 to 3,453,321 _15740 PS417_15745: PS417_15745 - lipid carrier protein, at 3,453,395 to 3,453,856 _15745 Position (kb) 3450 3451 3452 3453Strain fitness (log2 ratio) -2 -1 0 1at 3449.900 kb on + strand, within PS417_15730at 3449.900 kb on + strand, within PS417_15730at 3449.921 kb on + strand, within PS417_15730at 3450.275 kb on + strand, within PS417_15730at 3450.275 kb on + strand, within PS417_15730at 3450.287 kb on + strand, within PS417_15730at 3450.299 kb on + strand, within PS417_15730at 3450.725 kb on - strandat 3450.791 kb on + strandat 3450.791 kb on + strandat 3450.792 kb on - strandat 3451.041 kb on - strandat 3451.041 kb on - strandat 3451.041 kb on - strandat 3451.397 kb on + strand, within PS417_15735at 3451.397 kb on + strand, within PS417_15735at 3451.637 kb on + strand, within PS417_15735at 3451.870 kb on - strand, within PS417_15735at 3452.035 kb on - strand, within PS417_15735at 3452.099 kb on + strand, within PS417_15735at 3452.099 kb on + strand, within PS417_15735at 3452.099 kb on + strand, within PS417_15735at 3452.100 kb on - strand, within PS417_15735at 3452.100 kb on - strand, within PS417_15735at 3452.658 kb on + strandat 3452.658 kb on + strandat 3452.658 kb on + strandat 3452.658 kb on + strandat 3452.659 kb on - strandat 3452.659 kb on - strandat 3452.686 kb on - strandat 3452.820 kb on + strand, within PS417_15740at 3452.820 kb on + strand, within PS417_15740at 3452.908 kb on + strand, within PS417_15740at 3452.908 kb on + strand, within PS417_15740at 3452.908 kb on + strand, within PS417_15740at 3452.908 kb on + strand, within PS417_15740at 3452.908 kb on + strand, within PS417_15740at 3452.908 kb on + strand, within PS417_15740at 3452.909 kb on - strand, within PS417_15740at 3452.909 kb on - strand, within PS417_15740at 3452.909 kb on - strand, within PS417_15740at 3452.909 kb on - strand, within PS417_15740at 3453.176 kb on - strand, within PS417_15740at 3453.183 kb on + strand, within PS417_15740at 3453.183 kb on + strand, within PS417_15740at 3453.199 kb on - strand, within PS417_15740at 3453.199 kb on - strand, within PS417_15740at 3453.199 kb on - strand, within PS417_15740at 3453.252 kb on + strandat 3453.253 kb on - strand, within PS417_15740at 3453.463 kb on + strand, within PS417_15745at 3453.539 kb on - strand, within PS417_15745at 3453.539 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1
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3,449,900 + PS417_15730 0.47 -0.2
3,449,900 + PS417_15730 0.47 +0.4
3,449,921 + PS417_15730 0.48 -0.1
3,450,275 + PS417_15730 0.77 +0.6
3,450,275 + PS417_15730 0.77 +0.2
3,450,287 + PS417_15730 0.78 -0.0
3,450,299 + PS417_15730 0.78 +0.4
3,450,725 - +0.1
3,450,791 + -1.7
3,450,791 + -0.2
3,450,792 - -0.6
3,451,041 - +0.2
3,451,041 - +0.6
3,451,041 - +0.7
3,451,397 + PS417_15735 0.29 -0.5
3,451,397 + PS417_15735 0.29 -1.9
3,451,637 + PS417_15735 0.42 -0.3
3,451,870 - PS417_15735 0.55 -0.7
3,452,035 - PS417_15735 0.64 -0.6
3,452,099 + PS417_15735 0.68 -1.3
3,452,099 + PS417_15735 0.68 -0.4
3,452,099 + PS417_15735 0.68 -0.2
3,452,100 - PS417_15735 0.68 -0.7
3,452,100 - PS417_15735 0.68 -0.2
3,452,658 + +0.7
3,452,658 + +0.2
3,452,658 + +0.1
3,452,658 + +0.6
3,452,659 - -0.3
3,452,659 - +0.7
3,452,686 - -0.6
3,452,820 + PS417_15740 0.23 +0.6
3,452,820 + PS417_15740 0.23 +0.0
3,452,908 + PS417_15740 0.36 +0.2
3,452,908 + PS417_15740 0.36 +0.1
3,452,908 + PS417_15740 0.36 -0.0
3,452,908 + PS417_15740 0.36 +0.1
3,452,908 + PS417_15740 0.36 +0.1
3,452,908 + PS417_15740 0.36 -0.5
3,452,909 - PS417_15740 0.36 -0.5
3,452,909 - PS417_15740 0.36 -0.8
3,452,909 - PS417_15740 0.36 +0.2
3,452,909 - PS417_15740 0.36 -0.0
3,453,176 - PS417_15740 0.77 -0.1
3,453,183 + PS417_15740 0.79 +0.0
3,453,183 + PS417_15740 0.79 -0.6
3,453,199 - PS417_15740 0.81 -0.4
3,453,199 - PS417_15740 0.81 +0.5
3,453,199 - PS417_15740 0.81 -0.1
3,453,252 + +0.9
3,453,253 - PS417_15740 0.89 +0.3
3,453,463 + PS417_15745 0.15 -0.2
3,453,539 - PS417_15745 0.31 -0.5
3,453,539 - +1.2

Or see this region's nucleotide sequence