Strain Fitness in Pseudomonas simiae WCS417 around PS417_11345
Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1 |
---|---|---|---|---|---|
remove | |||||
2,442,432 | + | -1.1 | |||
2,442,473 | + | -1.3 | |||
2,442,474 | - | +1.0 | |||
2,442,652 | + | -0.1 | |||
2,442,653 | - | -0.4 | |||
2,442,818 | + | PS417_11340 | 0.28 | -0.3 | |
2,443,004 | + | PS417_11340 | 0.59 | -0.3 | |
2,443,934 | - | PS417_11345 | 0.40 | -0.2 | |
2,444,450 | - | +2.3 | |||
2,444,656 | + | PS417_11345 | 0.85 | -0.9 | |
2,444,656 | + | PS417_11345 | 0.85 | -0.2 | |
2,444,657 | - | PS417_11345 | 0.85 | -0.1 | |
2,444,657 | - | PS417_11345 | 0.85 | -1.2 | |
2,445,271 | + | PS417_11350 | 0.20 | +0.8 | |
2,445,272 | - | PS417_11350 | 0.20 | +0.5 | |
2,445,272 | - | PS417_11350 | 0.20 | +0.4 | |
2,445,272 | - | PS417_11350 | 0.20 | -0.1 | |
2,445,331 | + | PS417_11350 | 0.23 | +0.1 |
Or see this region's nucleotide sequence