Strain Fitness in Pseudomonas simiae WCS417 around PS417_11320

Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11315 and PS417_11320 are separated by 75 nucleotidesPS417_11320 and PS417_11325 are separated by 67 nucleotides PS417_11315: PS417_11315 - hemagglutinin, at 2,423,785 to 2,436,357 _11315 PS417_11320: PS417_11320 - hypothetical protein, at 2,436,433 to 2,438,019 _11320 PS417_11325: PS417_11325 - hypothetical protein, at 2,438,087 to 2,439,820 _11325 Position (kb) 2436 2437 2438 2439Strain fitness (log2 ratio) -1 0 1 2at 2435.440 kb on + strandat 2435.509 kb on + strandat 2435.647 kb on - strandat 2435.674 kb on + strandat 2435.674 kb on + strandat 2435.797 kb on + strandat 2435.797 kb on + strandat 2435.797 kb on + strandat 2435.797 kb on + strandat 2435.819 kb on - strandat 2436.743 kb on + strandat 2437.528 kb on - strand, within PS417_11320at 2438.226 kb on + strandat 2438.226 kb on + strandat 2438.586 kb on + strand, within PS417_11325at 2438.962 kb on - strand, within PS417_11325

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1
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2,435,440 + +0.9
2,435,509 + +0.2
2,435,647 - +0.1
2,435,674 + -0.1
2,435,674 + -0.2
2,435,797 + +2.2
2,435,797 + -0.4
2,435,797 + +0.9
2,435,797 + +0.1
2,435,819 - +0.4
2,436,743 + +0.9
2,437,528 - PS417_11320 0.69 -0.8
2,438,226 + +0.2
2,438,226 + +0.0
2,438,586 + PS417_11325 0.29 +0.1
2,438,962 - PS417_11325 0.50 -0.3

Or see this region's nucleotide sequence