Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_08640 and PS417_08645 are separated by 156 nucleotides PS417_08645 and PS417_08650 are separated by 74 nucleotides PS417_08650 and PS417_08655 are separated by 73 nucleotides
PS417_08640: PS417_08640 - sodium:proton antiporter, at 1,886,806 to 1,888,536
_08640
PS417_08645: PS417_08645 - glutaredoxin, at 1,888,693 to 1,888,929
_08645
PS417_08650: PS417_08650 - transcriptional regulator, at 1,889,004 to 1,889,339
_08650
PS417_08655: PS417_08655 - pseudouridine synthase, at 1,889,413 to 1,890,303
_08655
Position (kb)
1889
1890 Strain fitness (log2 ratio)
-2
-1
0
1 at 1888.448 kb on + strand at 1888.448 kb on + strand at 1888.449 kb on - strand at 1888.593 kb on - strand at 1888.594 kb on + strand at 1888.595 kb on - strand at 1888.655 kb on + strand at 1888.656 kb on - strand at 1888.668 kb on + strand at 1888.712 kb on + strand at 1888.713 kb on - strand at 1888.713 kb on - strand at 1888.715 kb on + strand at 1888.716 kb on - strand at 1888.835 kb on - strand, within PS417_08645 at 1888.955 kb on + strand at 1889.224 kb on - strand, within PS417_08650 at 1889.232 kb on + strand, within PS417_08650 at 1889.350 kb on - strand at 1889.461 kb on + strand at 1889.462 kb on - strand at 1889.462 kb on - strand at 1889.462 kb on - strand at 1889.605 kb on + strand, within PS417_08655 at 1889.626 kb on + strand, within PS417_08655 at 1889.626 kb on + strand, within PS417_08655 at 1889.627 kb on - strand, within PS417_08655 at 1889.627 kb on - strand, within PS417_08655 at 1889.629 kb on + strand, within PS417_08655 at 1889.629 kb on + strand, within PS417_08655 at 1889.629 kb on + strand, within PS417_08655 at 1889.629 kb on + strand, within PS417_08655 at 1889.821 kb on - strand, within PS417_08655 at 1889.921 kb on - strand, within PS417_08655 at 1889.921 kb on - strand, within PS417_08655 at 1889.970 kb on + strand, within PS417_08655 at 1889.971 kb on - strand, within PS417_08655 at 1889.971 kb on - strand, within PS417_08655 at 1890.150 kb on + strand, within PS417_08655 at 1890.150 kb on + strand, within PS417_08655 at 1890.156 kb on + strand, within PS417_08655 at 1890.302 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1 remove 1,888,448 + -0.2 1,888,448 + -0.0 1,888,449 - +0.8 1,888,593 - +0.1 1,888,594 + -0.4 1,888,595 - -0.3 1,888,655 + +0.0 1,888,656 - +0.7 1,888,668 + +0.1 1,888,712 + -0.0 1,888,713 - +0.3 1,888,713 - -0.8 1,888,715 + +0.9 1,888,716 - +0.3 1,888,835 - PS417_08645 0.60 +1.0 1,888,955 + -1.0 1,889,224 - PS417_08650 0.65 -0.6 1,889,232 + PS417_08650 0.68 -0.4 1,889,350 - -0.6 1,889,461 + +0.2 1,889,462 - +0.8 1,889,462 - -0.5 1,889,462 - -0.1 1,889,605 + PS417_08655 0.22 +0.1 1,889,626 + PS417_08655 0.24 -0.1 1,889,626 + PS417_08655 0.24 -0.7 1,889,627 - PS417_08655 0.24 +0.5 1,889,627 - PS417_08655 0.24 -0.9 1,889,629 + PS417_08655 0.24 -1.3 1,889,629 + PS417_08655 0.24 -0.7 1,889,629 + PS417_08655 0.24 +0.4 1,889,629 + PS417_08655 0.24 -0.5 1,889,821 - PS417_08655 0.46 -0.1 1,889,921 - PS417_08655 0.57 -1.0 1,889,921 - PS417_08655 0.57 +0.2 1,889,970 + PS417_08655 0.63 -0.7 1,889,971 - PS417_08655 0.63 +0.7 1,889,971 - PS417_08655 0.63 +0.5 1,890,150 + PS417_08655 0.83 -2.6 1,890,150 + PS417_08655 0.83 +0.9 1,890,156 + PS417_08655 0.83 +0.7 1,890,302 - -0.1
Or see this region's nucleotide sequence