Strain Fitness in Pseudomonas simiae WCS417 around PS417_05965
Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1 |
---|---|---|---|---|---|
remove | |||||
1,326,373 | + | PS417_05960 | 0.78 | -0.6 | |
1,326,374 | - | PS417_05960 | 0.78 | +2.3 | |
1,326,574 | - | -0.3 | |||
1,327,003 | - | PS417_05965 | 0.54 | -0.7 | |
1,327,003 | - | PS417_05965 | 0.54 | -1.0 | |
1,327,125 | + | PS417_05965 | 0.78 | -0.4 | |
1,327,235 | - | +1.0 | |||
1,327,235 | - | -0.0 | |||
1,327,371 | - | PS417_05970 | 0.11 | -0.1 | |
1,327,569 | - | PS417_05970 | 0.27 | +0.1 | |
1,327,676 | + | PS417_05970 | 0.35 | -0.1 | |
1,327,677 | - | PS417_05970 | 0.35 | +0.3 | |
1,327,736 | + | PS417_05970 | 0.40 | -0.4 | |
1,327,736 | + | PS417_05970 | 0.40 | -0.1 | |
1,327,835 | + | PS417_05970 | 0.48 | -0.1 | |
1,327,836 | - | PS417_05970 | 0.48 | +0.3 | |
1,327,868 | + | PS417_05970 | 0.50 | -0.4 | |
1,327,869 | - | PS417_05970 | 0.50 | -0.4 |
Or see this region's nucleotide sequence