Experiment: TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02970 and PS417_02975 are separated by 24 nucleotides PS417_02975 and PS417_02980 are separated by 314 nucleotides PS417_02980 and PS417_02985 are separated by 53 nucleotides
PS417_02970: PS417_02970 - acetyl-CoA carboxylase, at 679,244 to 679,708
_02970
PS417_02975: PS417_02975 - 3-dehydroquinate dehydratase, at 679,733 to 680,188
_02975
PS417_02980: PS417_02980 - chemotaxis protein, at 680,503 to 682,464
_02980
PS417_02985: PS417_02985 - diguanylate cyclase, at 682,518 to 684,188
_02985
Position (kb) 680
681
682
683 Strain fitness (log2 ratio) -2
-1
0
1 at 679.843 kb on - strand, within PS417_02975 at 679.952 kb on - strand, within PS417_02975 at 679.976 kb on - strand, within PS417_02975 at 680.046 kb on + strand, within PS417_02975 at 680.047 kb on - strand, within PS417_02975 at 680.267 kb on - strand at 680.418 kb on - strand at 680.418 kb on - strand at 681.356 kb on + strand, within PS417_02980 at 682.006 kb on + strand, within PS417_02980 at 682.359 kb on - strand at 682.599 kb on - strand at 682.840 kb on + strand, within PS417_02985 at 682.919 kb on + strand, within PS417_02985 at 682.919 kb on + strand, within PS417_02985 at 682.920 kb on - strand, within PS417_02985 at 683.035 kb on + strand, within PS417_02985 at 683.036 kb on - strand, within PS417_02985 at 683.209 kb on + strand, within PS417_02985 at 683.209 kb on + strand, within PS417_02985 at 683.209 kb on + strand, within PS417_02985 at 683.209 kb on + strand, within PS417_02985 at 683.209 kb on + strand, within PS417_02985 at 683.209 kb on + strand, within PS417_02985 at 683.230 kb on + strand, within PS417_02985 at 683.287 kb on + strand, within PS417_02985 at 683.287 kb on + strand, within PS417_02985 at 683.287 kb on + strand, within PS417_02985 at 683.287 kb on + strand, within PS417_02985 at 683.287 kb on + strand, within PS417_02985 at 683.287 kb on + strand, within PS417_02985 at 683.287 kb on + strand, within PS417_02985 at 683.287 kb on + strand, within PS417_02985 at 683.288 kb on - strand, within PS417_02985 at 683.288 kb on - strand, within PS417_02985 at 683.288 kb on - strand, within PS417_02985 at 683.288 kb on - strand, within PS417_02985 at 683.444 kb on - strand, within PS417_02985
Per-strain Table
Position Strand Gene LocusTag Fraction TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1 remove 679,843 - PS417_02975 0.24 -2.1 679,952 - PS417_02975 0.48 -0.6 679,976 - PS417_02975 0.53 +0.1 680,046 + PS417_02975 0.69 -0.1 680,047 - PS417_02975 0.69 -0.8 680,267 - -0.3 680,418 - +0.3 680,418 - +0.1 681,356 + PS417_02980 0.43 -0.9 682,006 + PS417_02980 0.77 -0.1 682,359 - -0.0 682,599 - -2.2 682,840 + PS417_02985 0.19 +0.2 682,919 + PS417_02985 0.24 -0.3 682,919 + PS417_02985 0.24 -0.5 682,920 - PS417_02985 0.24 +0.2 683,035 + PS417_02985 0.31 -0.3 683,036 - PS417_02985 0.31 -0.2 683,209 + PS417_02985 0.41 -0.1 683,209 + PS417_02985 0.41 -0.4 683,209 + PS417_02985 0.41 -1.7 683,209 + PS417_02985 0.41 -0.8 683,209 + PS417_02985 0.41 +0.0 683,209 + PS417_02985 0.41 +0.2 683,230 + PS417_02985 0.43 -0.1 683,287 + PS417_02985 0.46 +0.2 683,287 + PS417_02985 0.46 +0.1 683,287 + PS417_02985 0.46 -0.4 683,287 + PS417_02985 0.46 -0.3 683,287 + PS417_02985 0.46 -0.9 683,287 + PS417_02985 0.46 +0.8 683,287 + PS417_02985 0.46 -0.4 683,287 + PS417_02985 0.46 -0.4 683,288 - PS417_02985 0.46 +0.2 683,288 - PS417_02985 0.46 +0.2 683,288 - PS417_02985 0.46 +0.1 683,288 - PS417_02985 0.46 +0.0 683,444 - PS417_02985 0.55 -0.2
Or see this region's nucleotide sequence