Strain Fitness in Pseudomonas simiae WCS417 around PS417_17015
Experiment: TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1 |
|---|---|---|---|---|---|
| remove | |||||
| 3,716,645 | + | PS417_17010 | 0.53 | -0.2 | |
| 3,716,709 | - | PS417_17010 | 0.56 | +0.8 | |
| 3,716,709 | - | PS417_17010 | 0.56 | -0.6 | |
| 3,716,771 | + | PS417_17010 | 0.60 | +0.5 | |
| 3,716,771 | + | PS417_17010 | 0.60 | -0.2 | |
| 3,716,772 | - | PS417_17010 | 0.60 | -0.3 | |
| 3,716,840 | + | PS417_17010 | 0.64 | +0.6 | |
| 3,716,841 | - | PS417_17010 | 0.65 | -0.8 | |
| 3,716,841 | - | PS417_17010 | 0.65 | -0.5 | |
| 3,717,084 | - | PS417_17010 | 0.79 | +0.1 | |
| 3,717,217 | - | PS417_17010 | 0.88 | -0.6 | |
| 3,717,399 | - | -0.1 | |||
| 3,717,456 | - | -0.2 | |||
| 3,717,461 | + | -1.1 | |||
| 3,717,558 | + | -0.4 | |||
| 3,717,558 | + | +0.2 | |||
| 3,717,915 | - | PS417_17015 | 0.29 | -0.7 | |
| 3,718,082 | + | PS417_17015 | 0.44 | -0.8 | |
| 3,718,376 | + | PS417_17015 | 0.69 | -0.6 | |
| 3,718,451 | + | PS417_17015 | 0.76 | -1.1 | |
| 3,718,452 | - | PS417_17015 | 0.76 | +0.4 | |
| 3,718,615 | + | PS417_17015 | 0.90 | -0.7 | |
| 3,718,616 | - | PS417_17015 | 0.90 | -0.2 | |
| 3,718,616 | - | PS417_17015 | 0.90 | +0.2 | |
| 3,718,661 | + | -0.2 | |||
| 3,719,167 | + | PS417_17020 | 0.26 | +0.4 | |
| 3,719,578 | - | PS417_17020 | 0.52 | +0.0 |
Or see this region's nucleotide sequence