Strain Fitness in Pseudomonas simiae WCS417 around PS417_14435

Experiment: TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_14430 and PS417_14435 overlap by 4 nucleotidesPS417_14435 and PS417_14445 are separated by 117 nucleotides PS417_14430: PS417_14430 - AraC family transcriptional regulator, at 3,153,738 to 3,154,643 _14430 PS417_14435: PS417_14435 - transcriptional regulator, at 3,154,640 to 3,155,551 _14435 PS417_14445: PS417_14445 - aldo/keto reductase, at 3,155,669 to 3,156,664 _14445 Position (kb) 3154 3155 3156Strain fitness (log2 ratio) -2 -1 0 1at 3153.772 kb on + strandat 3153.773 kb on - strandat 3153.773 kb on - strandat 3153.773 kb on - strandat 3153.877 kb on + strand, within PS417_14430at 3153.878 kb on - strand, within PS417_14430at 3154.266 kb on + strand, within PS417_14430at 3154.803 kb on - strand, within PS417_14435at 3154.821 kb on + strand, within PS417_14435at 3154.977 kb on + strand, within PS417_14435at 3154.978 kb on - strand, within PS417_14435at 3155.040 kb on + strand, within PS417_14435at 3155.040 kb on + strand, within PS417_14435at 3155.041 kb on - strand, within PS417_14435at 3155.356 kb on - strand, within PS417_14435at 3155.415 kb on - strand, within PS417_14435at 3155.748 kb on - strandat 3155.833 kb on + strand, within PS417_14445at 3155.834 kb on - strand, within PS417_14445at 3155.837 kb on + strand, within PS417_14445at 3155.837 kb on + strand, within PS417_14445at 3155.837 kb on + strand, within PS417_14445at 3155.838 kb on - strand, within PS417_14445at 3156.038 kb on + strand, within PS417_14445at 3156.039 kb on - strand, within PS417_14445at 3156.039 kb on - strand, within PS417_14445at 3156.039 kb on - strand, within PS417_14445at 3156.351 kb on - strand, within PS417_14445at 3156.491 kb on + strandat 3156.523 kb on + strand, within PS417_14445at 3156.523 kb on + strand, within PS417_14445at 3156.524 kb on - strand, within PS417_14445at 3156.524 kb on - strand, within PS417_14445at 3156.524 kb on - strand, within PS417_14445at 3156.524 kb on - strand, within PS417_14445

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1
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3,153,772 + -0.1
3,153,773 - +0.3
3,153,773 - -0.1
3,153,773 - -1.1
3,153,877 + PS417_14430 0.15 +0.1
3,153,878 - PS417_14430 0.15 +0.0
3,154,266 + PS417_14430 0.58 -1.2
3,154,803 - PS417_14435 0.18 -0.6
3,154,821 + PS417_14435 0.20 -0.7
3,154,977 + PS417_14435 0.37 -0.4
3,154,978 - PS417_14435 0.37 -0.3
3,155,040 + PS417_14435 0.44 -1.8
3,155,040 + PS417_14435 0.44 +0.1
3,155,041 - PS417_14435 0.44 -0.3
3,155,356 - PS417_14435 0.79 -0.5
3,155,415 - PS417_14435 0.85 +0.1
3,155,748 - +0.4
3,155,833 + PS417_14445 0.16 +0.2
3,155,834 - PS417_14445 0.17 +0.4
3,155,837 + PS417_14445 0.17 +0.4
3,155,837 + PS417_14445 0.17 +0.4
3,155,837 + PS417_14445 0.17 +0.1
3,155,838 - PS417_14445 0.17 -0.0
3,156,038 + PS417_14445 0.37 -0.3
3,156,039 - PS417_14445 0.37 -0.3
3,156,039 - PS417_14445 0.37 +0.1
3,156,039 - PS417_14445 0.37 -0.3
3,156,351 - PS417_14445 0.68 +0.5
3,156,491 + +0.1
3,156,523 + PS417_14445 0.86 -0.5
3,156,523 + PS417_14445 0.86 +1.0
3,156,524 - PS417_14445 0.86 -0.1
3,156,524 - PS417_14445 0.86 +0.2
3,156,524 - PS417_14445 0.86 -0.4
3,156,524 - PS417_14445 0.86 -0.7

Or see this region's nucleotide sequence