Strain Fitness in Pseudomonas simiae WCS417 around PS417_10865
Experiment: TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1 |
---|---|---|---|---|---|
remove | |||||
2,321,040 | - | PS417_10860 | 0.11 | -0.8 | |
2,321,395 | + | PS417_10860 | 0.57 | +0.3 | |
2,321,600 | - | PS417_10860 | 0.83 | -0.1 | |
2,321,719 | + | -0.0 | |||
2,321,720 | - | -0.1 | |||
2,322,038 | + | +0.4 | |||
2,322,038 | + | +0.2 | |||
2,322,039 | - | +0.3 | |||
2,322,384 | - | PS417_10865 | 0.81 | -0.6 | |
2,322,512 | + | +0.2 | |||
2,322,512 | + | +0.4 | |||
2,322,512 | + | -1.1 | |||
2,322,603 | - | +0.9 | |||
2,322,888 | - | PS417_10870 | 0.11 | -0.9 | |
2,323,028 | + | PS417_10870 | 0.21 | -1.1 | |
2,323,028 | + | PS417_10870 | 0.21 | +0.5 |
Or see this region's nucleotide sequence