Strain Fitness in Pseudomonas simiae WCS417 around PS417_06055

Experiment: TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_06045 and PS417_06050 are separated by 55 nucleotidesPS417_06050 and PS417_06055 are separated by 270 nucleotidesPS417_06055 and PS417_06060 are separated by 185 nucleotides PS417_06045: PS417_06045 - membrane protein, at 1,341,557 to 1,342,342 _06045 PS417_06050: PS417_06050 - chromosome partitioning protein ParA, at 1,342,398 to 1,342,823 _06050 PS417_06055: PS417_06055 - pilin assembly protein, at 1,343,094 to 1,343,438 _06055 PS417_06060: PS417_06060 - phosphoenolpyruvate carboxylase, at 1,343,624 to 1,346,251 _06060 Position (kb) 1343 1344Strain fitness (log2 ratio) -1 0 1at 1342.105 kb on - strand, within PS417_06045at 1342.336 kb on + strandat 1342.399 kb on + strandat 1342.828 kb on + strandat 1343.073 kb on + strandat 1343.186 kb on - strand, within PS417_06055at 1343.236 kb on + strand, within PS417_06055at 1343.236 kb on + strand, within PS417_06055at 1343.237 kb on - strand, within PS417_06055at 1343.315 kb on - strand, within PS417_06055at 1343.315 kb on - strand, within PS417_06055at 1343.315 kb on - strand, within PS417_06055at 1343.372 kb on - strand, within PS417_06055at 1343.501 kb on - strandat 1343.514 kb on + strandat 1343.515 kb on - strandat 1343.546 kb on + strandat 1343.877 kb on - strandat 1343.877 kb on - strandat 1344.072 kb on - strand, within PS417_06060at 1344.278 kb on + strand, within PS417_06060at 1344.279 kb on - strand, within PS417_06060at 1344.423 kb on + strand, within PS417_06060

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1
remove
1,342,105 - PS417_06045 0.70 +0.4
1,342,336 + -0.0
1,342,399 + +0.0
1,342,828 + -0.0
1,343,073 + -0.2
1,343,186 - PS417_06055 0.27 -0.8
1,343,236 + PS417_06055 0.41 -0.7
1,343,236 + PS417_06055 0.41 +0.1
1,343,237 - PS417_06055 0.41 -0.5
1,343,315 - PS417_06055 0.64 -1.5
1,343,315 - PS417_06055 0.64 +0.6
1,343,315 - PS417_06055 0.64 -0.8
1,343,372 - PS417_06055 0.81 -0.3
1,343,501 - +0.2
1,343,514 + +0.7
1,343,515 - +0.4
1,343,546 + +0.4
1,343,877 - +0.1
1,343,877 - +0.4
1,344,072 - PS417_06060 0.17 +0.5
1,344,278 + PS417_06060 0.25 -0.3
1,344,279 - PS417_06060 0.25 -0.4
1,344,423 + PS417_06060 0.30 -0.0

Or see this region's nucleotide sequence