Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5023 and PP_5024 are separated by 79 nucleotides PP_5024 and PP_5025 are separated by 293 nucleotides
PP_5023: PP_5023 - Amino acid ABC transporter, permease protein, at 5,722,256 to 5,723,218
_5023
PP_5024: PP_5024 - Amino acid ABC transporter, periplasmic amino acid-binding protein, at 5,723,298 to 5,724,098
_5024
PP_5025: PP_5025 - Glucans biosynthesis glucosyltransferase H, at 5,724,392 to 5,726,965
_5025
Position (kb) 5723
5724
5725 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5722.326 kb on + strand at 5722.326 kb on + strand at 5722.327 kb on - strand at 5722.327 kb on - strand at 5722.327 kb on - strand at 5722.361 kb on - strand, within PP_5023 at 5722.379 kb on - strand, within PP_5023 at 5722.379 kb on - strand, within PP_5023 at 5722.608 kb on + strand, within PP_5023 at 5722.609 kb on - strand, within PP_5023 at 5722.609 kb on - strand, within PP_5023 at 5722.609 kb on - strand, within PP_5023 at 5722.609 kb on - strand, within PP_5023 at 5722.609 kb on - strand, within PP_5023 at 5722.686 kb on + strand, within PP_5023 at 5722.686 kb on + strand, within PP_5023 at 5722.687 kb on - strand, within PP_5023 at 5722.687 kb on - strand, within PP_5023 at 5722.687 kb on - strand, within PP_5023 at 5722.738 kb on - strand, within PP_5023 at 5723.043 kb on + strand, within PP_5023 at 5723.077 kb on - strand, within PP_5023 at 5723.115 kb on + strand, within PP_5023 at 5723.139 kb on + strand at 5723.139 kb on + strand at 5723.139 kb on + strand at 5723.139 kb on + strand at 5723.139 kb on + strand at 5723.139 kb on + strand at 5723.140 kb on - strand at 5723.140 kb on - strand at 5723.140 kb on - strand at 5723.225 kb on + strand at 5723.233 kb on + strand at 5723.234 kb on - strand at 5723.274 kb on - strand at 5723.274 kb on - strand at 5723.299 kb on + strand at 5723.300 kb on - strand at 5723.348 kb on + strand at 5723.356 kb on + strand at 5723.356 kb on + strand at 5723.356 kb on + strand at 5723.357 kb on - strand at 5723.357 kb on - strand at 5723.414 kb on - strand, within PP_5024 at 5723.449 kb on + strand, within PP_5024 at 5723.516 kb on - strand, within PP_5024 at 5723.527 kb on + strand, within PP_5024 at 5723.597 kb on - strand, within PP_5024 at 5723.665 kb on + strand, within PP_5024 at 5723.689 kb on + strand, within PP_5024 at 5723.689 kb on + strand, within PP_5024 at 5723.689 kb on + strand, within PP_5024 at 5723.690 kb on - strand, within PP_5024 at 5723.854 kb on + strand, within PP_5024 at 5723.968 kb on + strand, within PP_5024 at 5723.968 kb on + strand, within PP_5024 at 5723.968 kb on + strand, within PP_5024 at 5723.969 kb on - strand, within PP_5024 at 5723.969 kb on - strand, within PP_5024 at 5723.969 kb on - strand, within PP_5024 at 5724.086 kb on - strand at 5724.133 kb on + strand at 5724.134 kb on - strand at 5724.134 kb on - strand at 5724.134 kb on - strand at 5724.134 kb on - strand at 5724.185 kb on + strand at 5724.185 kb on + strand at 5724.281 kb on + strand at 5724.282 kb on - strand at 5724.282 kb on - strand at 5724.295 kb on + strand at 5724.296 kb on - strand at 5724.305 kb on - strand at 5724.571 kb on + strand at 5724.759 kb on + strand, within PP_5025 at 5724.759 kb on + strand, within PP_5025 at 5724.760 kb on - strand, within PP_5025 at 5724.796 kb on - strand, within PP_5025
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 5,722,326 + +1.6 5,722,326 + +2.6 5,722,327 - +0.2 5,722,327 - +1.2 5,722,327 - +1.7 5,722,361 - PP_5023 0.11 +0.6 5,722,379 - PP_5023 0.13 +2.0 5,722,379 - PP_5023 0.13 +1.5 5,722,608 + PP_5023 0.37 +1.8 5,722,609 - PP_5023 0.37 +1.0 5,722,609 - PP_5023 0.37 +1.4 5,722,609 - PP_5023 0.37 +0.3 5,722,609 - PP_5023 0.37 +0.2 5,722,609 - PP_5023 0.37 +1.0 5,722,686 + PP_5023 0.45 +1.9 5,722,686 + PP_5023 0.45 +1.0 5,722,687 - PP_5023 0.45 +3.2 5,722,687 - PP_5023 0.45 +1.1 5,722,687 - PP_5023 0.45 -3.0 5,722,738 - PP_5023 0.50 +1.8 5,723,043 + PP_5023 0.82 +3.0 5,723,077 - PP_5023 0.85 +2.0 5,723,115 + PP_5023 0.89 -0.0 5,723,139 + +1.3 5,723,139 + +1.1 5,723,139 + +1.0 5,723,139 + +2.6 5,723,139 + +2.2 5,723,139 + +1.3 5,723,140 - +1.9 5,723,140 - +0.3 5,723,140 - +1.3 5,723,225 + +2.2 5,723,233 + +0.7 5,723,234 - -0.5 5,723,274 - +0.3 5,723,274 - +0.2 5,723,299 + +0.4 5,723,300 - +0.8 5,723,348 + +1.4 5,723,356 + +0.8 5,723,356 + +1.0 5,723,356 + +0.6 5,723,357 - +0.2 5,723,357 - +0.7 5,723,414 - PP_5024 0.14 +1.4 5,723,449 + PP_5024 0.19 +1.0 5,723,516 - PP_5024 0.27 +1.0 5,723,527 + PP_5024 0.29 +1.2 5,723,597 - PP_5024 0.37 +1.2 5,723,665 + PP_5024 0.46 +1.5 5,723,689 + PP_5024 0.49 +0.8 5,723,689 + PP_5024 0.49 +1.5 5,723,689 + PP_5024 0.49 -0.1 5,723,690 - PP_5024 0.49 +1.5 5,723,854 + PP_5024 0.69 +1.7 5,723,968 + PP_5024 0.84 +0.3 5,723,968 + PP_5024 0.84 +0.9 5,723,968 + PP_5024 0.84 +1.7 5,723,969 - PP_5024 0.84 +1.8 5,723,969 - PP_5024 0.84 +1.0 5,723,969 - PP_5024 0.84 +2.1 5,724,086 - +1.3 5,724,133 + -0.3 5,724,134 - -1.3 5,724,134 - -1.4 5,724,134 - -1.3 5,724,134 - -2.1 5,724,185 + +0.9 5,724,185 + +1.5 5,724,281 + +0.4 5,724,282 - -2.3 5,724,282 - -0.8 5,724,295 + +0.7 5,724,296 - -1.6 5,724,305 - +0.1 5,724,571 + +1.1 5,724,759 + PP_5025 0.14 +0.5 5,724,759 + PP_5025 0.14 -0.3 5,724,760 - PP_5025 0.14 +0.6 5,724,796 - PP_5025 0.16 +2.0
Or see this region's nucleotide sequence