Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4906 and PP_4907 are separated by 44 nucleotides PP_4907 and PP_4908 are separated by 9 nucleotides PP_4908 and PP_4909 are separated by 75 nucleotides
PP_4906: PP_4906 - conserved protein of unknown function, at 5,576,279 to 5,577,814
_4906
PP_4907: PP_4907 - Thiosulfate sulfurtransferase, at 5,577,859 to 5,578,668
_4907
PP_4908: PP_4908 - phosphatidylserine decarboxylase, at 5,578,678 to 5,579,541
_4908
PP_4909: PP_4909 - phosphoserine phosphatase, at 5,579,617 to 5,580,864
_4909
Position (kb) 5578
5579
5580 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5577.796 kb on + strand at 5577.797 kb on - strand at 5577.824 kb on + strand at 5578.108 kb on + strand, within PP_4907 at 5578.108 kb on + strand, within PP_4907 at 5578.108 kb on + strand, within PP_4907 at 5578.108 kb on + strand, within PP_4907 at 5578.117 kb on + strand, within PP_4907 at 5578.186 kb on + strand, within PP_4907 at 5578.186 kb on + strand, within PP_4907 at 5578.186 kb on + strand, within PP_4907 at 5578.192 kb on + strand, within PP_4907 at 5578.192 kb on + strand, within PP_4907 at 5578.280 kb on + strand, within PP_4907 at 5578.570 kb on + strand, within PP_4907 at 5578.570 kb on + strand, within PP_4907 at 5578.612 kb on + strand at 5579.569 kb on - strand at 5579.569 kb on - strand at 5579.569 kb on - strand at 5579.654 kb on + strand at 5579.655 kb on - strand at 5579.927 kb on + strand, within PP_4909 at 5579.927 kb on + strand, within PP_4909 at 5579.927 kb on + strand, within PP_4909 at 5579.927 kb on + strand, within PP_4909 at 5579.928 kb on - strand, within PP_4909 at 5579.928 kb on - strand, within PP_4909 at 5579.928 kb on - strand, within PP_4909 at 5579.966 kb on + strand, within PP_4909 at 5579.966 kb on + strand, within PP_4909 at 5579.966 kb on + strand, within PP_4909 at 5579.966 kb on + strand, within PP_4909 at 5579.967 kb on - strand, within PP_4909 at 5579.967 kb on - strand, within PP_4909 at 5579.967 kb on - strand, within PP_4909 at 5579.967 kb on - strand, within PP_4909 at 5579.970 kb on + strand, within PP_4909 at 5579.999 kb on + strand, within PP_4909 at 5580.000 kb on - strand, within PP_4909 at 5580.000 kb on - strand, within PP_4909 at 5580.467 kb on + strand, within PP_4909 at 5580.538 kb on - strand, within PP_4909
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 5,577,796 + -0.8 5,577,797 - -0.6 5,577,824 + +0.5 5,578,108 + PP_4907 0.31 -0.3 5,578,108 + PP_4907 0.31 -1.1 5,578,108 + PP_4907 0.31 -1.0 5,578,108 + PP_4907 0.31 +1.1 5,578,117 + PP_4907 0.32 +0.4 5,578,186 + PP_4907 0.40 +0.9 5,578,186 + PP_4907 0.40 -0.2 5,578,186 + PP_4907 0.40 +0.0 5,578,192 + PP_4907 0.41 +0.4 5,578,192 + PP_4907 0.41 -0.6 5,578,280 + PP_4907 0.52 +1.0 5,578,570 + PP_4907 0.88 +0.2 5,578,570 + PP_4907 0.88 -0.2 5,578,612 + +0.5 5,579,569 - +0.2 5,579,569 - -2.0 5,579,569 - +0.7 5,579,654 + -1.5 5,579,655 - -3.1 5,579,927 + PP_4909 0.25 -2.1 5,579,927 + PP_4909 0.25 -1.7 5,579,927 + PP_4909 0.25 -1.8 5,579,927 + PP_4909 0.25 -2.6 5,579,928 - PP_4909 0.25 -1.4 5,579,928 - PP_4909 0.25 -0.6 5,579,928 - PP_4909 0.25 -0.9 5,579,966 + PP_4909 0.28 -1.5 5,579,966 + PP_4909 0.28 -3.6 5,579,966 + PP_4909 0.28 -0.7 5,579,966 + PP_4909 0.28 -3.4 5,579,967 - PP_4909 0.28 -2.9 5,579,967 - PP_4909 0.28 -2.9 5,579,967 - PP_4909 0.28 -2.3 5,579,967 - PP_4909 0.28 -3.4 5,579,970 + PP_4909 0.28 -2.1 5,579,999 + PP_4909 0.31 -1.9 5,580,000 - PP_4909 0.31 -0.8 5,580,000 - PP_4909 0.31 -1.0 5,580,467 + PP_4909 0.68 -3.4 5,580,538 - PP_4909 0.74 -1.7
Or see this region's nucleotide sequence