Strain Fitness in Pseudomonas putida KT2440 around PP_4891

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
5,559,992	-		PP_4890	0.57	-0.0
5,560,103	-		PP_4890	0.67	+0.7
5,560,103	-		PP_4890	0.67	+0.6
5,560,103	-		PP_4890	0.67	+1.6
5,560,291	-		PP_4890	0.83	-0.5
5,560,349	-		PP_4890	0.88	+1.9
5,560,349	-		PP_4890	0.88	-1.6
5,560,450	-				+0.4
5,560,486	-				+1.2
5,560,498	-				+0.8
5,560,713	-				-2.5
5,560,713	-				+0.8
5,560,713	-				+0.4
5,560,713	-				+1.5
5,560,713	-				+0.2
5,560,752	+				+1.9
5,560,752	+				+1.7
5,560,886	+		PP_4891	0.10	+1.1
5,560,935	-		PP_4891	0.16	-1.3
5,560,935	-		PP_4891	0.16	+2.4
5,560,946	+		PP_4891	0.17	-1.8
5,560,946	+		PP_4891	0.17	+1.7
5,560,946	+		PP_4891	0.17	-1.2
5,560,946	+		PP_4891	0.17	-0.5
5,560,946	+		PP_4891	0.17	-1.3
5,560,947	-		PP_4891	0.17	-2.1
5,560,947	-		PP_4891	0.17	-2.3
5,560,947	-		PP_4891	0.17	-1.4
5,560,947	-		PP_4891	0.17	-0.7
5,560,950	+		PP_4891	0.17	-1.2
5,560,951	-		PP_4891	0.18	-2.3
5,560,951	-		PP_4891	0.18	-0.9
5,560,951	-		PP_4891	0.18	-2.2
5,561,000	+		PP_4891	0.23	-1.6
5,561,001	-		PP_4891	0.23	-2.0
5,561,278	-		PP_4891	0.55	-1.6
5,561,278	-		PP_4891	0.55	-2.1
5,561,366	+		PP_4891	0.65	-0.6
5,561,367	-		PP_4891	0.65	-1.5
5,561,367	-		PP_4891	0.65	-2.0
5,561,504	+		PP_4891	0.81	-2.4
5,561,597	+				-0.3
5,561,597	+				-0.2
5,561,597	+				-0.9
5,561,597	+				+0.7
5,561,597	+				-2.4
5,561,597	+				-0.7
5,561,598	-				-1.8
5,561,598	-				-1.9
5,561,598	-				-0.0
5,561,658	+				-1.0
5,561,658	+				-0.1
5,561,658	+				-2.3
5,561,658	+				-1.4
5,561,658	+				-1.7
5,561,659	-				-1.2
5,561,681	+				-0.6
5,561,684	+				-2.5
5,561,685	-				-0.6
5,561,815	+		PP_4892	0.12	-2.3
5,561,816	-		PP_4892	0.12	-0.2
5,561,816	-		PP_4892	0.12	-2.0
5,561,816	-		PP_4892	0.12	+0.6
5,561,873	-		PP_4892	0.17	-1.3
5,561,873	-		PP_4892	0.17	-1.3
5,561,896	+		PP_4892	0.19	-0.9
5,561,933	-		PP_4892	0.22	-1.2
5,562,065	-		PP_4892	0.33	-0.3
5,562,065	-		PP_4892	0.33	+0.7
5,562,163	-		PP_4892	0.41	-1.9
5,562,163	-		PP_4892	0.41	+0.3
5,562,196	+		PP_4892	0.43	-0.3
5,562,196	+		PP_4892	0.43	+0.3
5,562,196	+		PP_4892	0.43	-1.4
5,562,197	-		PP_4892	0.44	-1.0
5,562,197	-		PP_4892	0.44	-1.7
5,562,197	-		PP_4892	0.44	-2.2
5,562,382	+		PP_4892	0.59	-2.7
5,562,383	-		PP_4892	0.59	-1.3
5,562,448	+		PP_4892	0.64	-0.9
5,562,448	+		PP_4892	0.64	-0.9
5,562,448	+		PP_4892	0.64	+1.2
5,562,502	+		PP_4892	0.69	-1.8
5,562,502	+		PP_4892	0.69	+0.3
5,562,503	-		PP_4892	0.69	-0.3
5,562,532	+		PP_4892	0.71	-1.4
5,562,532	+		PP_4892	0.71	-1.8
5,562,532	+				+0.3
5,562,533	-		PP_4892	0.71	-0.5
5,562,533	-		PP_4892	0.71	-0.3
5,562,533	-		PP_4892	0.71	-2.3
5,562,533	-		PP_4892	0.71	-1.6
5,562,533	-		PP_4892	0.71	-0.7
5,562,534	+		PP_4892	0.71	-0.7
5,562,536	-		PP_4892	0.71	-1.2
5,562,536	-		PP_4892	0.71	-1.5
5,562,583	+		PP_4892	0.75	+0.5
5,562,583	+		PP_4892	0.75	+1.3
5,562,584	-		PP_4892	0.75	-1.3
5,562,584	-		PP_4892	0.75	-0.7
5,562,584	-		PP_4892	0.75	-2.1
5,562,584	-		PP_4892	0.75	-0.9